miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00670;mir-105;ABRO01195452.1/9888-9808 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 81
Score = 121 bits (61), Expect = 1e-27
Identities = 76/81 (93%)
Strand = Plus / Plus
Query: 1 tgtgcatcgtagtcaaatgctcagactcctgtggtggccgttcatgcaccacggatgttt 60
|||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 1 tgtgcatcgtggtcaaatgctcagactcctgtggtggctgctcatgcaccacggatgttt 60
Query: 61 gagcatgtgctatggtgtcta 81
|||||| ||| ||||||||||
Sbjct: 61 gagcatatgccatggtgtcta 81
>RF00670;mir-105;AAEX02003804.1/918-997 9615:Canis lupus
familiaris (dog)
Length = 80
Score = 89.7 bits (45), Expect = 5e-18
Identities = 73/81 (90%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 tgtgcatcgtagtcaaatgctcagactcctgtggtggccgttcatgcaccacggatgttt 60
|||||||| | ||||||||||||||||||| ||||||| | | |||||||| | ||||||
Sbjct: 1 tgtgcatcatggtcaaatgctcagactcct-tggtggctgcttatgcaccatgaatgttt 59
Query: 61 gagcatgtgctatggtgtcta 81
|||||||||||||||||||||
Sbjct: 60 gagcatgtgctatggtgtcta 80
>RF00670;mir-105;AAIY01029761.1/2576-2497 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 80
Score = 81.8 bits (41), Expect = 1e-15
Identities = 72/81 (88%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 tgtgcatcgtagtcaaatgctcagactcctgtggtggccgttcatgcaccacggatgttt 60
||||||| || ||||||||||||||||||||| ||||| ||| ||||||| |||| |||
Sbjct: 1 tgtgcattgtggtcaaatgctcagactcctgttgtggctgtttgtgcaccatggat-ttt 59
Query: 61 gagcatgtgctatggtgtcta 81
||||||||||||||| |||||
Sbjct: 60 gagcatgtgctatggcgtcta 80
>RF00670;mir-105;AABR04012381.1/35187-35107 10116:Rattus
norvegicus (Norway rat)
Length = 81
Score = 65.9 bits (33), Expect = 7e-11
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 9 gtagtcaaatgctcagactcctgtggtggccgttcatgcaccacggatgtttgagcatgt 68
|||||||| |||||||| |||||||||| | | ||| | |||||||||||||||||||
Sbjct: 9 gtagtcaagtgctcagatgtctgtggtggctgcttatgtatcacggatgtttgagcatgt 68
Query: 69 gctatggtgtcta 81
|||||||| ||||
Sbjct: 69 gctatggtatcta 81
>RF00670;mir-105;CAAA01059274.1/4642-4722 10090:Mus musculus
(house mouse)
Length = 81
Score = 56.0 bits (28), Expect = 7e-08
Identities = 64/76 (84%)
Strand = Plus / Plus
Query: 1 tgtgcatcgtagtcaaatgctcagactcctgtggtggccgttcatgcaccacggatgttt 60
||||||| ||| ||| |||||||| | ||||||||| | | |||||||||| ||| ||
Sbjct: 1 tgtgcattttagccaagtgctcagatgcttgtggtggctgcttatgcaccacgaatgctt 60
Query: 61 gagcatgtgctatggt 76
||||||||||||||||
Sbjct: 61 gagcatgtgctatggt 76
>RF00670;mir-105;AANN01683306.1/2545-2466 9365:Erinaceus europaeus
(western European hedgehog)
Length = 80
Score = 52.0 bits (26), Expect = 1e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 44 atgcaccacggatgtttgagcatgtgctatggtgtcta 81
||||||||||||||||||||||| | | ||||||||||
Sbjct: 43 atgcaccacggatgtttgagcatttacaatggtgtcta 80
>RF00670;mir-105;AAWR02040596.1/6201-6119 9796:Equus caballus
(horse)
Length = 83
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 tgtgcatcgtagtcaaatgctcagactcc 29
|||||||| ||||||||||||||||||||
Sbjct: 1 tgtgcatcatagtcaaatgctcagactcc 29
>RF00670;mir-105;AANN01683306.1/428-348 9365:Erinaceus europaeus
(western European hedgehog)
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 7 tcgtagtcaaatgctcagactcctgtggtggc 38
||||||||||||||||||| |||||| |||||
Sbjct: 7 tcgtagtcaaatgctcagattcctgtagtggc 38
>RF00670;mir-105;AALT01106831.1/106-184 42254:Sorex araneus
(European shrew)
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 44 atgcaccacggatgtttgagcatgtgctatggtgtcta 81
||||||| ||||| ||||||||||||||| |||||||
Sbjct: 42 atgcaccgtggatgcttgagcatgtgctattgtgtcta 79
>RF00670;mir-105;AAEX02003804.1/4224-4304 9615:Canis lupus
familiaris (dog)
Length = 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 29 ctgtggtggccgttcatgcaccacggatgtttga 62
|||||||||| | ||||||||| |||||||||||
Sbjct: 29 ctgtggtggctgctcatgcacctcggatgtttga 62
>RF00670;mir-105;AAQR01359394.1/5928-5853 30611:Otolemur garnettii
(small-eared galago)
Length = 76
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 39 cgttcatgcaccacggatgtttgagcatgtgcta 72
||||||||||||| |||| ||||||||||||||
Sbjct: 39 cgttcatgcaccatggatacttgagcatgtgcta 72
