miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00129;mir-103;AADN02035922.1/14217-14140 9031:Gallus gallus
(chicken)
Length = 78
Score = 111 bits (56), Expect = 1e-24
Identities = 65/68 (95%)
Strand = Plus / Plus
Query: 5 ctgccctcggcttctttacagtgctgccttgttgcggatggatcaagcagcattgtacag 64
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 3 ctgccttcggcttctttacagtgctgccttgttgcatatggatcaagcagcattgtacag 62
Query: 65 ggctatga 72
||||||||
Sbjct: 63 ggctatga 70
>RF00129;mir-103;ABRO01336156.1/1674-1751 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 78
Score = 103 bits (52), Expect = 3e-22
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 5 ctgccctcggcttctttacagtgctgccttgttgcggatggatcaagcagcattgtacag 64
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 3 ctgccctcggcttctctacagtgctgccttgttgcatgtggatcaagcagcattgtacag 62
Query: 65 ggctatga 72
||||||||
Sbjct: 63 ggctatga 70
>RF00129;mir-103;AAVX01046194.1/322-245 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 77.8 bits (39), Expect = 2e-14
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 6 tgccctcggcttctttacagtgctgccttgttgcggatggatcaagcagcattgtacagg 65
|||| |||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 4 tgccttcggcttctttacagtgctgccttgtgacgtgaagatcaagcagcattgtacagg 63
Query: 66 gctatga 72
|||||||
Sbjct: 64 gctatga 70
>RF00129;mir-103;AANH01004124.1/31115-31038 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 71.9 bits (36), Expect = 1e-12
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 17 tctttacagtgctgccttgttgcggatggatcaagcagcattgtacagggctatga 72
||||||| |||||||||||| ||| | ||||||||||||||||||||||||||||
Sbjct: 15 tctttacggtgctgccttgtggcgtctcgatcaagcagcattgtacagggctatga 70
>RF00129;mir-103;AADN02048857.1/398-321 9031:Gallus gallus
(chicken)
Length = 78
Score = 69.9 bits (35), Expect = 4e-12
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 14 gcttctttacagtgctgccttgttgcggatggatcaagcagcattgtacagggctatga 72
||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 12 gcttctttacagtgctgccttgttgcgttcatgtcaagcagcattgtacagggctatga 70
>RF00129;mir-103;AAVX01197460.1/556-479 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 69.9 bits (35), Expect = 4e-12
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 14 gcttctttacagtgctgccttgttgcggatggatcaagcagcattgtacagggctatga 72
||||||||||||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct: 12 gcttctttacagtgctgacttgtagcatccggatcaagcagcattgtacagggctatga 70
>RF00129;mir-103;BX323842.8/48404-48481 7955:Danio rerio
(zebrafish)
Length = 78
Score = 63.9 bits (32), Expect = 2e-10
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 17 tctttacagtgctgccttgttgcggatggatcaagcagcattgtacagggctatga 72
||||||| |||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 15 tctttacggtgctgccttgtggaatctggatcaagcagcattgtacagggctatga 70
>RF00129;mir-103;AAGU02403797.1/4408-4485 9785:Loxodonta africana
(African savanna elephant)
Length = 78
Score = 61.9 bits (31), Expect = 1e-09
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 14 gcttctttacagtgctgccttgttgcggatggatcaagcagcattgtacagggctatga 72
||||||||||||||||||||||| || | ||||||||||||||||||||||||||
Sbjct: 12 gcttctttacagtgctgccttgtagcattcaggtcaagcagcattgtacagggctatga 70
>RF00129;mir-103;BAAF04068432.1/1846-1923 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 61.9 bits (31), Expect = 1e-09
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 26 tgctgccttgttgcggatggatcaagcagcattgtacagggctatga 72
||||||||||| ||| | ||||||||||||||||||||||||||||
Sbjct: 24 tgctgccttgtggcgtcttgatcaagcagcattgtacagggctatga 70
>RF00129;mir-103;AAVX01541574.1/765-688 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 60.0 bits (30), Expect = 4e-09
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 13 ggcttctttacagtgctgccttgttgcggatggatcaagcagcattgtacagggctat 70
||||||||||||||| |||||||| || ||||||||||||||||||||||||||
Sbjct: 11 ggcttctttacagtgttgccttgtagcttggagatcaagcagcattgtacagggctat 68
>RF00129;mir-103;AADN02027745.1/21215-21292 9031:Gallus gallus
(chicken)
Length = 78
Score = 58.0 bits (29), Expect = 2e-08
Identities = 53/59 (89%), Gaps = 4/59 (6%)
Strand = Plus / Plus
Query: 14 gcttctttacagtgctgccttgttgcggatgga--tcaagcagcattgtacagggctat 70
|||||||||||||| |||||||| || ||||| ||||||||||||||||||||||||
Sbjct: 12 gcttctttacagtgttgccttgtggc--atggagttcaagcagcattgtacagggctat 68
>RF00129;mir-103;BAAE01010024.1/828-751 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 58.0 bits (29), Expect = 2e-08
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 14 gcttctttacagtgctgccttgttgcggatggatcaagcagcattgtacagggctat 70
|||||||||||||| |||||||| || ||||||||||||||||||||||||||
Sbjct: 12 gcttctttacagtgttgccttgtggcatggcgatcaagcagcattgtacagggctat 68
>RF00129;mir-103;AANH01006686.1/13404-13327 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 56.0 bits (28), Expect = 6e-08
Identities = 52/58 (89%), Gaps = 4/58 (6%)
Strand = Plus / Plus
Query: 17 tctttacagtgctgccttgttgcggat--ggatcaagcagcattgtacagggctatga 72
|||||||||||||||||||| | ||| || ||||||||||||||||||||||||||
Sbjct: 15 tctttacagtgctgccttgt--ctgatcaggttcaagcagcattgtacagggctatga 70
>RF00129;mir-103;CT573279.9/199469-199546 7955:Danio rerio
(zebrafish)
Length = 78
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 46 atcaagcagcattgtacagggctatga 72
|||||||||||||||||||||||||||
Sbjct: 44 atcaagcagcattgtacagggctatga 70
>RF00129;mir-103;BAAE01256445.1/2223-2146 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 47 tcaagcagcattgtacagggctatga 72
||||||||||||||||||||||||||
Sbjct: 45 tcaagcagcattgtacagggctatga 70
>RF00129;mir-103;BX511087.12/72494-72571 7955:Danio rerio
(zebrafish)
Length = 78
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 45 gatcaagcagcattgtacagggct 68
||||||||||||||||||||||||
Sbjct: 43 gatcaagcagcattgtacagggct 66
