miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00239;mir-124;BX511178.6/169756-169675 7955:Danio rerio
(zebrafish)
Length = 82
Score = 125 bits (63), Expect = 7e-29
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 6 cgtgttcacagcggaccttgatttaaatgtccatacaattaaggcacgcggtgaatgcca 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 cgtgttcacagcggaccttgatttaaatgtccatacaattaaggcacgcggtgaatgcca 71
Query: 66 aga 68
|||
Sbjct: 72 aga 74
>RF00239;mir-124;BAAF04105842.1/7834-7753 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 125 bits (63), Expect = 7e-29
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 6 cgtgttcacagcggaccttgatttaaatgtccatacaattaaggcacgcggtgaatgcca 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 cgtgttcacagcggaccttgatttaaatgtccatacaattaaggcacgcggtgaatgcca 71
Query: 66 aga 68
|||
Sbjct: 72 aga 74
>RF00239;mir-124;AAWZ01025406.1/2960-3041 28377:Anolis
carolinensis (green anole)
Length = 82
Score = 119 bits (60), Expect = 4e-27
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 1 ctctccgtgttcacagcggaccttgatttaaatgtccatacaattaaggcacgcggtgaa 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 ctctgcgtgttcacagcggaccttgatttaaatgtccatacaattaaggcacgcggtgaa 66
Query: 61 tgccaaga 68
||| ||||
Sbjct: 67 tgctaaga 74
>RF00239;mir-124;AAWZ01017180.1/15233-15154 28377:Anolis
carolinensis (green anole)
Length = 80
Score = 103 bits (52), Expect = 3e-22
Identities = 66/68 (97%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 1 ctctccgtgttcacagcggaccttgatttaaatgtccatacaattaaggcacgcggtgaa 60
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 7 ctctccgtgttcacagcggaccttgatttaa-tgtc-atacaattaaggcacgcggtgaa 64
Query: 61 tgccaaga 68
||||||||
Sbjct: 65 tgccaaga 72
>RF00239;mir-124;AAVX01582238.1/229-149 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 103 bits (52), Expect = 3e-22
Identities = 65/68 (95%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 1 ctctccgtgttcacagcggaccttgatttaaatgtccatacaattaaggcacgcggtgaa 60
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 7 ctctccgtgttcacagcggaccttgattt-aatgtttatacaattaaggcacgcggtgaa 65
Query: 61 tgccaaga 68
||||||||
Sbjct: 66 tgccaaga 73
>RF00239;mir-124;AAIY01443585.1/551-630 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 80
Score = 99.6 bits (50), Expect = 4e-21
Identities = 64/66 (96%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 3 ctccgtgttcacagcggaccttgatttaaatgtccatacaattaaggcacgcggtgaatg 62
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 9 ctccgtgttcacagcggaccttgatttaa-tgtc-atacaattaaggcacgcggtgaatg 66
Query: 63 ccaaga 68
||||||
Sbjct: 67 ccaaga 72
>RF00239;mir-124;BX324109.8/64997-64917 7955:Danio rerio
(zebrafish)
Length = 81
Score = 95.6 bits (48), Expect = 6e-20
Identities = 64/68 (94%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 1 ctctccgtgttcacagcggaccttgatttaaatgtccatacaattaaggcacgcggtgaa 60
|||| ||||||||| |||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 7 ctctgcgtgttcacggcggaccttgatttaa-tatccatacaattaaggcacgcggtgaa 65
Query: 61 tgccaaga 68
||||||||
Sbjct: 66 tgccaaga 73
>RF00239;mir-124;BAAF04060426.1/3450-3529 8090:Oryzias latipes
(Japanese medaka)
Length = 80
Score = 95.6 bits (48), Expect = 6e-20
Identities = 65/68 (95%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 1 ctctccgtgttcacagcggaccttgatttaaatgtccatacaattaaggcacgcggtgaa 60
||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||
Sbjct: 7 ctctccgtgttcacagcggaccttgattt-aatgt-cttacaattaaggcacgcggtgaa 64
Query: 61 tgccaaga 68
||||||||
Sbjct: 65 tgccaaga 72
>RF00239;mir-124;ABGA01235197.1/1392-1331 9601:Pongo abelii
(Sumatran orangutan)
Length = 62
Score = 85.7 bits (43), Expect = 6e-17
Identities = 59/63 (93%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 4 tccgtgttcacagcggaccttgatttaaatgtccatacaattaaggcacgcggtgaatgc 63
|||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 tccgtgttcacagcgggacctgatttaaatgtccatacaa-taaggcacgcggtgaatgc 59
Query: 64 caa 66
|||
Sbjct: 60 caa 62
>RF00239;mir-124;AANH01003936.1/69725-69645 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 83.8 bits (42), Expect = 2e-16
Identities = 58/62 (93%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 7 gtgttcacagcggaccttgatttaaatgtccatacaattaaggcacgcggtgaatgccaa 66
|||||||||| |||||||||||||| | || |||||||||||||||||||||||||||||
Sbjct: 13 gtgttcacagtggaccttgatttaatt-tcaatacaattaaggcacgcggtgaatgccaa 71
Query: 67 ga 68
||
Sbjct: 72 ga 73
>RF00239;mir-124;AAWZ01041803.1/11566-11646 28377:Anolis
carolinensis (green anole)
Length = 81
Score = 69.9 bits (35), Expect = 4e-12
Identities = 57/63 (90%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 6 cgtgttcacagcggaccttgatttaaatgtccatacaattaaggcacgcggtgaatgcca 65
||||||||||| |||||||||||| | ||| | ||||||||||||||||||||||||||
Sbjct: 12 cgtgttcacagtggaccttgatttca-tgtggacacaattaaggcacgcggtgaatgcca 70
Query: 66 aga 68
|||
Sbjct: 71 aga 73
>RF00239;mir-124;AANH01002585.1/13981-13901 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 69.9 bits (35), Expect = 4e-12
Identities = 57/63 (90%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 6 cgtgttcacagcggaccttgatttaaatgtccatacaattaaggcacgcggtgaatgcca 65
||||||||| ||||||||||||||| | | ||||||||||||||||||||||||||||
Sbjct: 12 cgtgttcacggcggaccttgatttattag-caatacaattaaggcacgcggtgaatgcca 70
Query: 66 aga 68
|||
Sbjct: 71 aga 73
>RF00239;mir-124;BAAF04094312.1/9605-9526 8090:Oryzias latipes
(Japanese medaka)
Length = 80
Score = 58.0 bits (29), Expect = 1e-08
Identities = 59/68 (86%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 1 ctctccgtgttcacagcggaccttgatttaaatgtccatacaattaaggcacgcggtgaa 60
||||| |||||||||| |||||||||||| || || ||||||||||||||||||||
Sbjct: 7 ctctcagtgttcacagtggaccttgatttcaaaa--cagtcaattaaggcacgcggtgaa 64
Query: 61 tgccaaga 68
||||||||
Sbjct: 65 tgccaaga 72
>RF00239;mir-124;BAAE01194669.1/2121-2201 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 58.0 bits (29), Expect = 1e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 40 acaattaaggcacgcggtgaatgccaaga 68
|||||||||||||||||||||||||||||
Sbjct: 45 acaattaaggcacgcggtgaatgccaaga 73
>RF00239;mir-124;AAGJ02120869.1/14315-14397
7668:Strongylocentrotus purpuratus
Length = 83
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 40 acaattaaggcacgcggtgaatgccaag 67
||||||||||||||||||||||||||||
Sbjct: 46 acaattaaggcacgcggtgaatgccaag 73
>RF00239;mir-124;ABEP02005892.1/41262-41341 7739:Branchiostoma
floridae (Florida lancelet)
Length = 80
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 41 caattaaggcacgcggtgaatgccaaga 68
||||||||||||||||||||||||||||
Sbjct: 45 caattaaggcacgcggtgaatgccaaga 72
>RF00239;mir-124;AC189672.3/51235-51156 6334:Trichinella spiralis
Length = 80
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 42 aattaaggcacgcggtgaatgccaag 67
||||||||||||||||||||||||||
Sbjct: 46 aattaaggcacgcggtgaatgccaag 71
>RF00239;mir-124;BX248497.11/64645-64566 7955:Danio rerio
(zebrafish)
Length = 80
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 41 caattaaggcacgcggtgaatgccaa 66
||||||||||||||||||||||||||
Sbjct: 45 caattaaggcacgcggtgaatgccaa 70
>RF00239;mir-124;ABKE01011138.1/1481-1398 54126:Pristionchus
pacificus
Length = 84
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 45 taaggcacgcggtgaatgccaaga 68
||||||||||||||||||||||||
Sbjct: 53 taaggcacgcggtgaatgccaaga 76
>RF00239;mir-124;AADN02043986.1/2081-2002 9031:Gallus gallus
(chicken)
Length = 80
Score = 48.1 bits (24), Expect = 1e-05
Identities = 53/60 (88%), Gaps = 2/60 (3%)
Strand = Plus / Plus
Query: 7 gtgttcacagcggaccttgatttaaatgtccatacaattaaggcacgcggtgaatgccaa 66
|||||||| || ||||||||||||| |||| | || |||||||||||| |||||||||||
Sbjct: 13 gtgttcactgcagaccttgatttaa-tgtc-acacgattaaggcacgcagtgaatgccaa 70
>RF00239;mir-124;AAZO01006175.1/169136-169059 121224:Pediculus
humanus corporis (human body louse)
Length = 78
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 45 taaggcacgcggtgaatgccaaga 68
||||||||||||||||||||||||
Sbjct: 47 taaggcacgcggtgaatgccaaga 70
>RF00239;mir-124;ABLF01025804.1/1243-1161 7029:Acyrthosiphon pisum
(pea aphid)
Length = 83
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 45 taaggcacgcggtgaatgccaaga 68
||||||||||||||||||||||||
Sbjct: 52 taaggcacgcggtgaatgccaaga 75
>RF00239;mir-124;AADK01010415.1/6990-7072 7091:Bombyx mori
(domestic silkworm)
Length = 83
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 45 taaggcacgcggtgaatgccaaga 68
||||||||||||||||||||||||
Sbjct: 52 taaggcacgcggtgaatgccaaga 75
>RF00239;mir-124;AADG05004246.1/190424-190509 7460:Apis mellifera
(honey bee)
Length = 86
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 45 taaggcacgcggtgaatgccaaga 68
||||||||||||||||||||||||
Sbjct: 55 taaggcacgcggtgaatgccaaga 78
>RF00239;mir-124;AAWU01000987.1/43993-44075 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 83
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 45 taaggcacgcggtgaatgccaaga 68
||||||||||||||||||||||||
Sbjct: 52 taaggcacgcggtgaatgccaaga 75
>RF00239;mir-124;AAGE02000531.1/21424-21342 7159:Aedes aegypti
(yellow fever mosquito)
Length = 83
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 45 taaggcacgcggtgaatgccaaga 68
||||||||||||||||||||||||
Sbjct: 52 taaggcacgcggtgaatgccaaga 75
>RF00239;mir-124;AAPT01021775.1/703690-703766 7222:Drosophila
grimshawi
Length = 77
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 45 taaggcacgcggtgaatgccaaga 68
||||||||||||||||||||||||
Sbjct: 46 taaggcacgcggtgaatgccaaga 69
>RF00239;mir-124;AANI01016269.1/7414-7490 7244:Drosophila virilis
Length = 77
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 45 taaggcacgcggtgaatgccaaga 68
||||||||||||||||||||||||
Sbjct: 46 taaggcacgcggtgaatgccaaga 69
>RF00239;mir-124;AAJJ01000069.1/11639-11717 7070:Tribolium
castaneum (red flour beetle)
Length = 79
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 45 taaggcacgcggtgaatgccaaga 68
||||||||||||||||||||||||
Sbjct: 48 taaggcacgcggtgaatgccaaga 71
>RF00239;mir-124;ABJB010184237.1/16835-16915 6945:Ixodes
scapularis (black-legged tick)
Length = 81
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 45 taaggcacgcggtgaatgccaaga 68
||||||||||||||||||||||||
Sbjct: 50 taaggcacgcggtgaatgccaaga 73
>RF00239;mir-124;AAWT01083931.1/8247-8331 79327:Schmidtea
mediterranea
Length = 85
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 44 ttaaggcacgcggtgaatgcca 65
||||||||||||||||||||||
Sbjct: 53 ttaaggcacgcggtgaatgcca 74
>RF00239;mir-124;ABLA01036893.1/860-781 51029:Heterodera glycines
Length = 80
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 45 taaggcacgcggtgaatgccaa 66
||||||||||||||||||||||
Sbjct: 49 taaggcacgcggtgaatgccaa 70
>RF00239;mir-124;AACT01007791.1/10034-10112 51511:Ciona savignyi
Length = 79
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 45 taaggcacgcggtgaatgccaa 66
||||||||||||||||||||||
Sbjct: 48 taaggcacgcggtgaatgccaa 69
>RF00239;mir-124;AACT01004897.1/11101-11179 51511:Ciona savignyi
Length = 79
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 45 taaggcacgcggtgaatgccaa 66
||||||||||||||||||||||
Sbjct: 48 taaggcacgcggtgaatgccaa 69
>RF00239;mir-124;AABS01000310.1/18792-18714 7719:Ciona
intestinalis
Length = 79
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 45 taaggcacgcggtgaatgccaa 66
||||||||||||||||||||||
Sbjct: 48 taaggcacgcggtgaatgccaa 69
>RF00239;mir-124;AABS01000310.1/18932-18854 7719:Ciona
intestinalis
Length = 79
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 45 taaggcacgcggtgaatgccaa 66
||||||||||||||||||||||
Sbjct: 48 taaggcacgcggtgaatgccaa 69
>RF00239;mir-124;AAWT01073305.1/601-525 79327:Schmidtea
mediterranea
Length = 77
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 43 attaaggcacgcggtgaatgccaag 67
|||||||||||| ||||||||||||
Sbjct: 44 attaaggcacgctgtgaatgccaag 68
>RF00239;mir-124;AAWT01074852.1/5580-5657 79327:Schmidtea
mediterranea
Length = 78
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 45 taaggcacgcggtgaatgcca 65
|||||||||||||||||||||
Sbjct: 46 taaggcacgcggtgaatgcca 66
>RF00239;mir-124;ABLE02011614.1/2350-2264 281687:Caenorhabditis
japonica
Length = 87
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 45 taaggcacgcggtgaatgcca 65
|||||||||||||||||||||
Sbjct: 56 taaggcacgcggtgaatgcca 76
>RF00239;mir-124;Z72504.1/8327-8413 6239:Caenorhabditis elegans
Length = 87
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 45 taaggcacgcggtgaatgcca 65
|||||||||||||||||||||
Sbjct: 56 taaggcacgcggtgaatgcca 76
>RF00239;mir-124;ABEG01011177.1/3244-3158 135651:Caenorhabditis
brenneri
Length = 87
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 45 taaggcacgcggtgaatgcca 65
|||||||||||||||||||||
Sbjct: 56 taaggcacgcggtgaatgcca 76
>RF00239;mir-124;CAAC02000470.1/381134-381048 6238:Caenorhabditis
briggsae
Length = 87
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 45 taaggcacgcggtgaatgcca 65
|||||||||||||||||||||
Sbjct: 56 taaggcacgcggtgaatgcca 76
>RF00239;mir-124;AAVX01290765.1/186-107 7868:Callorhinchus milii
(ghost shark)
Length = 80
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 39 tacaattaaggcacgcggtgaatgc 63
|||||||||||||| ||||||||||
Sbjct: 43 tacaattaaggcacacggtgaatgc 67
