miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00239;mir-124;AAIY01443585.1/551-630 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 80
Score = 111 bits (56), Expect = 8e-25
Identities = 56/56 (100%)
Strand = Plus / Plus
Query: 1 gtgttcacagcggaccttgatttaatgtcatacaattaaggcacgcggtgaatgcc 56
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 gtgttcacagcggaccttgatttaatgtcatacaattaaggcacgcggtgaatgcc 68
>RF00239;mir-124;AAWZ01017180.1/15233-15154 28377:Anolis
carolinensis (green anole)
Length = 80
Score = 111 bits (56), Expect = 8e-25
Identities = 56/56 (100%)
Strand = Plus / Plus
Query: 1 gtgttcacagcggaccttgatttaatgtcatacaattaaggcacgcggtgaatgcc 56
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 gtgttcacagcggaccttgatttaatgtcatacaattaaggcacgcggtgaatgcc 68
>RF00239;mir-124;BAAF04060426.1/3450-3529 8090:Oryzias latipes
(Japanese medaka)
Length = 80
Score = 103 bits (52), Expect = 2e-22
Identities = 55/56 (98%)
Strand = Plus / Plus
Query: 1 gtgttcacagcggaccttgatttaatgtcatacaattaaggcacgcggtgaatgcc 56
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 13 gtgttcacagcggaccttgatttaatgtcttacaattaaggcacgcggtgaatgcc 68
>RF00239;mir-124;AAVX01582238.1/229-149 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 89.7 bits (45), Expect = 3e-18
Identities = 55/57 (96%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 1 gtgttcacagcggaccttgatttaatg-tcatacaattaaggcacgcggtgaatgcc 56
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 13 gtgttcacagcggaccttgatttaatgtttatacaattaaggcacgcggtgaatgcc 69
>RF00239;mir-124;BX511178.6/169756-169675 7955:Danio rerio
(zebrafish)
Length = 82
Score = 83.8 bits (42), Expect = 2e-16
Identities = 56/58 (96%), Gaps = 2/58 (3%)
Strand = Plus / Plus
Query: 1 gtgttcacagcggaccttgatttaa-tgtc-atacaattaaggcacgcggtgaatgcc 56
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 13 gtgttcacagcggaccttgatttaaatgtccatacaattaaggcacgcggtgaatgcc 70
>RF00239;mir-124;BAAF04105842.1/7834-7753 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 83.8 bits (42), Expect = 2e-16
Identities = 56/58 (96%), Gaps = 2/58 (3%)
Strand = Plus / Plus
Query: 1 gtgttcacagcggaccttgatttaa-tgtc-atacaattaaggcacgcggtgaatgcc 56
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 13 gtgttcacagcggaccttgatttaaatgtccatacaattaaggcacgcggtgaatgcc 70
>RF00239;mir-124;AAWZ01025406.1/2960-3041 28377:Anolis
carolinensis (green anole)
Length = 82
Score = 81.8 bits (41), Expect = 7e-16
Identities = 55/57 (96%), Gaps = 2/57 (3%)
Strand = Plus / Plus
Query: 1 gtgttcacagcggaccttgatttaa-tgtc-atacaattaaggcacgcggtgaatgc 55
||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 13 gtgttcacagcggaccttgatttaaatgtccatacaattaaggcacgcggtgaatgc 69
>RF00239;mir-124;BX324109.8/64997-64917 7955:Danio rerio
(zebrafish)
Length = 81
Score = 81.8 bits (41), Expect = 7e-16
Identities = 54/57 (94%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 1 gtgttcacagcggaccttgatttaatgtc-atacaattaaggcacgcggtgaatgcc 56
|||||||| ||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 13 gtgttcacggcggaccttgatttaatatccatacaattaaggcacgcggtgaatgcc 69
>RF00239;mir-124;AANH01003936.1/69725-69645 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 81.8 bits (41), Expect = 7e-16
Identities = 54/57 (94%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 1 gtgttcacagcggaccttgatttaatgtca-tacaattaaggcacgcggtgaatgcc 56
|||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 13 gtgttcacagtggaccttgatttaatttcaatacaattaaggcacgcggtgaatgcc 69
>RF00239;mir-124;AADN02043986.1/2081-2002 9031:Gallus gallus
(chicken)
Length = 80
Score = 71.9 bits (36), Expect = 7e-13
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 1 gtgttcacagcggaccttgatttaatgtcatacaattaaggcacgcggtgaatgcc 56
|||||||| || |||||||||||||||||| || |||||||||||| |||||||||
Sbjct: 13 gtgttcactgcagaccttgatttaatgtcacacgattaaggcacgcagtgaatgcc 68
>RF00239;mir-124;BX248497.11/64645-64566 7955:Danio rerio
(zebrafish)
Length = 80
Score = 71.9 bits (36), Expect = 7e-13
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 1 gtgttcacagcggaccttgatttaatgtcatacaattaaggcacgcggtgaatgcc 56
|||||||||| ||||||||||||| ||| | ||||||||||||||||||||||||
Sbjct: 13 gtgttcacagtggaccttgatttattgtatttcaattaaggcacgcggtgaatgcc 68
>RF00239;mir-124;AAWZ01041803.1/11566-11646 28377:Anolis
carolinensis (green anole)
Length = 81
Score = 65.9 bits (33), Expect = 4e-11
Identities = 52/57 (91%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 1 gtgttcacagcggaccttgatttaatgtc-atacaattaaggcacgcggtgaatgcc 56
|||||||||| |||||||||||| |||| | |||||||||||||||||||||||||
Sbjct: 13 gtgttcacagtggaccttgatttcatgtggacacaattaaggcacgcggtgaatgcc 69
>RF00239;mir-124;AANH01002585.1/13981-13901 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 65.9 bits (33), Expect = 4e-11
Identities = 52/57 (91%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 1 gtgttcacagcggaccttgatttaatgtca-tacaattaaggcacgcggtgaatgcc 56
|||||||| ||||||||||||||| | || ||||||||||||||||||||||||||
Sbjct: 13 gtgttcacggcggaccttgatttattagcaatacaattaaggcacgcggtgaatgcc 69
>RF00239;mir-124;AAVX01290765.1/186-107 7868:Callorhinchus milii
(ghost shark)
Length = 80
Score = 61.9 bits (31), Expect = 7e-10
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 1 gtgttcacagcggaccttgatttaatgtcatacaattaaggcacgcggtgaatgc 55
||||||| ||||| ||||||||||||| |||||||||||||| ||||||||||
Sbjct: 13 gtgttcatggcggatcttgatttaatgtggtacaattaaggcacacggtgaatgc 67
>RF00239;mir-124;BAAF04094312.1/9605-9526 8090:Oryzias latipes
(Japanese medaka)
Length = 80
Score = 56.0 bits (28), Expect = 4e-08
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 1 gtgttcacagcggaccttgatttaatgtcatacaattaaggcacgcggtgaatgcc 56
|||||||||| |||||||||||| | || ||||||||||||||||||||||||
Sbjct: 13 gtgttcacagtggaccttgatttcaaaacagtcaattaaggcacgcggtgaatgcc 68
>RF00239;mir-124;AAGJ02120869.1/14315-14397
7668:Strongylocentrotus purpuratus
Length = 83
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 32 acaattaaggcacgcggtgaatgcc 56
|||||||||||||||||||||||||
Sbjct: 46 acaattaaggcacgcggtgaatgcc 70
>RF00239;mir-124;BAAE01194669.1/2121-2201 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 32 acaattaaggcacgcggtgaatgcc 56
|||||||||||||||||||||||||
Sbjct: 45 acaattaaggcacgcggtgaatgcc 69
>RF00239;mir-124;ABEP02005892.1/41262-41341 7739:Branchiostoma
floridae (Florida lancelet)
Length = 80
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 33 caattaaggcacgcggtgaatgcc 56
||||||||||||||||||||||||
Sbjct: 45 caattaaggcacgcggtgaatgcc 68
>RF00239;mir-124;AC189672.3/51235-51156 6334:Trichinella spiralis
Length = 80
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 34 aattaaggcacgcggtgaatgcc 56
|||||||||||||||||||||||
Sbjct: 46 aattaaggcacgcggtgaatgcc 68
>RF00239;mir-124;ABGA01235197.1/1392-1331 9601:Pongo abelii
(Sumatran orangutan)
Length = 62
Score = 44.1 bits (22), Expect = 2e-04
Identities = 52/58 (89%), Gaps = 3/58 (5%)
Strand = Plus / Plus
Query: 1 gtgttcacagcggaccttgatttaa-tgtc-atacaattaaggcacgcggtgaatgcc 56
||||||||||||| | |||||||| |||| ||||||| |||||||||||||||||||
Sbjct: 4 gtgttcacagcgggacctgatttaaatgtccatacaat-aaggcacgcggtgaatgcc 60
>RF00239;mir-124;AAWT01083931.1/8247-8331 79327:Schmidtea
mediterranea
Length = 85
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 36 ttaaggcacgcggtgaatgcc 56
|||||||||||||||||||||
Sbjct: 53 ttaaggcacgcggtgaatgcc 73
