miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00052;lin-4;ABRQ01266683.1/74-144 9813:Procavia capensis (cape
rock hyrax)
Length = 71
Score = 133 bits (67), Expect = 4e-31
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 9 tctcaatccctgagaccctaacttgtgatgtttaccgtttaaatccacgggttaggctct 68
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tctcaatccctgagaccctaatttgtgatgtttaccgtttaaatccacgggttaggctct 60
Query: 69 tgggagctgcg 79
|||||||||||
Sbjct: 61 tgggagctgcg 71
>RF00052;lin-4;AAQQ01300049.1/868-937 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 70
Score = 117 bits (59), Expect = 2e-26
Identities = 69/71 (97%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 9 tctcaatccctgagaccctaacttgtgatgtttaccgtttaaatccacgggttaggctct 68
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 tctcagtccctgagaccctaacttgtgatgtttaccgtttaaat-cacgggttaggctct 59
Query: 69 tgggagctgcg 79
|||||||||||
Sbjct: 60 tgggagctgcg 70
>RF00052;lin-4;AAVX01166684.1/76-6 7868:Callorhinchus milii (ghost
shark)
Length = 71
Score = 89.7 bits (45), Expect = 5e-18
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 9 tctcaatccctgagaccctaacttgtgatgtttaccgtttaaatccacgggttaggctct 68
||||| |||||||||||||||||||||||||||| | | | |||||||||||||||||||
Sbjct: 1 tctcagtccctgagaccctaacttgtgatgtttaacttcttaatccacgggttaggctct 60
Query: 69 tggga 73
|||||
Sbjct: 61 tggga 65
>RF00052;lin-4;AAWZ01018120.1/1937-2007 28377:Anolis carolinensis
(green anole)
Length = 71
Score = 85.7 bits (43), Expect = 9e-17
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 15 tccctgagaccctaacttgtgatgtttaccgtttaaatccacgggttaggctcttgggag 74
|||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct: 7 tccctgagaccctaacttgtgacgtttagtttttaagtccacgggttaggctcttgggag 66
Query: 75 ctg 77
|||
Sbjct: 67 ctg 69
>RF00052;lin-4;BX663520.9/242554-242624 7955:Danio rerio
(zebrafish)
Length = 71
Score = 67.9 bits (34), Expect = 2e-11
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 12 caatccctgagaccctaacttgtgatgtttaccgtttaaatccacgggttaggctcttgg 71
||||||||||||||||||||||||| |||| || ||| | ||||||||||| ||||||
Sbjct: 4 caatccctgagaccctaacttgtgacgttttcctgttatgtgcacgggttaggttcttgg 63
Query: 72 gagctg 77
||||||
Sbjct: 64 gagctg 69
>RF00052;lin-4;AAGJ02034255.1/5710-5639 7668:Strongylocentrotus
purpuratus
Length = 72
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 13 aatccctgagaccctaacttgtgatgt 39
|||||||||||||||||||||||||||
Sbjct: 5 aatccctgagaccctaacttgtgatgt 31
>RF00052;lin-4;BAAF04030494.1/1393-1463 8090:Oryzias latipes
(Japanese medaka)
Length = 71
Score = 54.0 bits (27), Expect = 3e-07
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 9 tctcaatccctgagaccctaacttgtgatgtttaccgtttaaatccacgggttaggctct 68
||||| |||||||||||||||||||||| |||| | | | | |||||||| ||||||
Sbjct: 1 tctcattccctgagaccctaacttgtgacgttttgctctgatgtgcacgggttgggctct 60
Query: 69 tgggagctgcg 79
|||||||||||
Sbjct: 61 tgggagctgcg 71
>RF00052;lin-4;AAJJ01000960.1/11976-11909 7070:Tribolium castaneum
(red flour beetle)
Length = 68
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 tccctgagaccctaacttgtgatgtt 40
||||||||||||||||||||||||||
Sbjct: 7 tccctgagaccctaacttgtgatgtt 32
>RF00052;lin-4;ABEP02005607.1/36374-36438 7739:Branchiostoma
floridae (Florida lancelet)
Length = 65
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 tccctgagaccctaacttgtgatgt 39
|||||||||||||||||||||||||
Sbjct: 7 tccctgagaccctaacttgtgatgt 31
>RF00052;lin-4;CAAB01001308.1/53300-53230 31033:Takifugu rubripes
Length = 71
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 9 tctcaatccctgagaccctaacttgtga 36
||||| ||||||||||||||||||||||
Sbjct: 1 tctcattccctgagaccctaacttgtga 28
>RF00052;lin-4;AAZO01005184.1/24431-24501 121224:Pediculus humanus
corporis (human body louse)
Length = 71
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 tccctgagaccctaacttgtgatg 38
||||||||||||||||||||||||
Sbjct: 7 tccctgagaccctaacttgtgatg 30
>RF00052;lin-4;ABJB010589032.1/2364-2293 6945:Ixodes scapularis
(black-legged tick)
Length = 72
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 tccctgagaccctaacttgtgatg 38
||||||||||||||||||||||||
Sbjct: 7 tccctgagaccctaacttgtgatg 30
>RF00052;lin-4;AADN02042928.1/16455-16525 9031:Gallus gallus
(chicken)
Length = 71
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 15 tccctgagaccctaacttgtgatgttt 41
|||||||||||||||||||||| ||||
Sbjct: 7 tccctgagaccctaacttgtgaggttt 33
>RF00052;lin-4;BAAF04027540.1/8397-8327 8090:Oryzias latipes
(Japanese medaka)
Length = 71
Score = 46.1 bits (23), Expect = 7e-05
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 15 tccctgagaccctaacttgtgatgtttaccgtttaaatccacgggttaggctcttgggag 74
|||||||||||||||||||||| ||| | || | |||||||||| |||||| |||||
Sbjct: 7 tccctgagaccctaacttgtgacgttgttctttcatgtccacgggtttggctctcgggag 66
Query: 75 ctg 77
|||
Sbjct: 67 ctg 69
>RF00052;lin-4;ABRQ01036339.1/2289-2358 9813:Procavia capensis
(cape rock hyrax)
Length = 70
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tccctgagaccctaacttgtga 36
||||||||||||||||||||||
Sbjct: 7 tccctgagaccctaacttgtga 28
>RF00052;lin-4;BX284646.4/38142-38072 7955:Danio rerio (zebrafish)
Length = 71
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tccctgagaccctaacttgtga 36
||||||||||||||||||||||
Sbjct: 7 tccctgagaccctaacttgtga 28
>RF00052;lin-4;CAAK05045496.1/11692-11621 7955:Danio rerio
(zebrafish)
Length = 72
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tccctgagaccctaacttgtga 36
||||||||||||||||||||||
Sbjct: 7 tccctgagaccctaacttgtga 28
>RF00052;lin-4;BAAE01206590.1/1293-1364 8090:Oryzias latipes
(Japanese medaka)
Length = 72
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tccctgagaccctaacttgtga 36
||||||||||||||||||||||
Sbjct: 7 tccctgagaccctaacttgtga 28
>RF00052;lin-4;ABKQ02024066.1/14943-15012 377270:Anopheles gambiae
S
Length = 70
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tccctgagaccctaacttgtga 36
||||||||||||||||||||||
Sbjct: 7 tccctgagaccctaacttgtga 28
>RF00052;lin-4;AAPU01010514.1/89504-89436 7230:Drosophila
mojavensis
Length = 69
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tccctgagaccctaacttgtga 36
||||||||||||||||||||||
Sbjct: 7 tccctgagaccctaacttgtga 28
