miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00649;mir-128;AAYZ01088765.1/13723-13805 9978:Ochotona princeps
(American pika)
Length = 83
Score = 135 bits (68), Expect = 1e-31
Identities = 81/84 (96%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 1 tgtgcagtgggaaggggggccgatgcactgtacgagagtgagtagcaggtctcacagtga 60
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtgcagtgggaaggggg-ccgatacactgtacgagagtgagtagcaggtctcacagtga 59
Query: 61 accggtctctttccctactgtgtc 84
||||||||||||| ||||||||||
Sbjct: 60 accggtctctttctctactgtgtc 83
>RF00649;mir-128;AADN02001307.1/37422-37505 9031:Gallus gallus
(chicken)
Length = 84
Score = 109 bits (55), Expect = 6e-24
Identities = 70/75 (93%)
Strand = Plus / Plus
Query: 10 ggaaggggggccgatgcactgtacgagagtgagtagcaggtctcacagtgaaccggtctc 69
||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 10 ggaaggggggccgttacactgtaagagagtgagtagcaggtctcacagtgaaccggtctc 69
Query: 70 tttccctactgtgtc 84
||| ||| |||||||
Sbjct: 70 ttttcctgctgtgtc 84
>RF00649;mir-128;AAPN01083252.1/12750-12833 9258:Ornithorhynchus
anatinus (platypus)
Length = 84
Score = 101 bits (51), Expect = 1e-21
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 10 ggaaggggggccgatgcactgtacgagagtgagtagcaggtctcacagtgaaccggtctc 69
||||||||||||| | ||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 10 ggaaggggggccgttacactgtaagagagtgagtaccaggtctcacagtgaaccggtctc 69
Query: 70 tttccctactg 80
|||||| ||||
Sbjct: 70 tttcccgactg 80
>RF00649;mir-128;AAVX01050759.1/9619-9536 7868:Callorhinchus milii
(ghost shark)
Length = 84
Score = 97.6 bits (49), Expect = 2e-20
Identities = 58/61 (95%)
Strand = Plus / Plus
Query: 15 gggggccgatgcactgtacgagagtgagtagcaggtctcacagtgaaccggtctctttcc 74
|||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 15 gggggccgttacactgtaagagagtgagtagcaggtctcacagtgaaccggtctctttcc 74
Query: 75 c 75
|
Sbjct: 75 c 75
>RF00649;mir-128;BAAE01144804.1/712-628 8090:Oryzias latipes
(Japanese medaka)
Length = 85
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 48 ggtctcacagtgaaccggtctcttt 72
|||||||||||||||||||||||||
Sbjct: 49 ggtctcacagtgaaccggtctcttt 73
>RF00649;mir-128;AAPN01333292.1/110-29 9258:Ornithorhynchus
anatinus (platypus)
Length = 82
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 49 gtctcacagtgaaccggtctcttt 72
||||||||||||||||||||||||
Sbjct: 47 gtctcacagtgaaccggtctcttt 70
>RF00649;mir-128;CAAK05043402.1/2817-2901 7955:Danio rerio
(zebrafish)
Length = 85
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 49 gtctcacagtgaaccggtctcttt 72
||||||||||||||||||||||||
Sbjct: 50 gtctcacagtgaaccggtctcttt 73
>RF00649;mir-128;AADN02016954.1/107412-107493 9031:Gallus gallus
(chicken)
Length = 82
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 50 tctcacagtgaaccggtctcttt 72
|||||||||||||||||||||||
Sbjct: 48 tctcacagtgaaccggtctcttt 70
>RF00649;mir-128;CAAK05046368.1/14745-14829 7955:Danio rerio
(zebrafish)
Length = 85
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 50 tctcacagtgaaccggtctcttt 72
|||||||||||||||||||||||
Sbjct: 51 tctcacagtgaaccggtctcttt 73
>RF00649;mir-128;CAAB01001230.1/17567-17484 31033:Takifugu
rubripes
Length = 84
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 50 tctcacagtgaaccggtctcttt 72
|||||||||||||||||||||||
Sbjct: 50 tctcacagtgaaccggtctcttt 72
>RF00649;mir-128;ABPJ01009935.1/1344-1261 35575:Mchenga conophoros
Length = 84
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 50 tctcacagtgaaccggtctcttt 72
|||||||||||||||||||||||
Sbjct: 50 tctcacagtgaaccggtctcttt 72
>RF00649;mir-128;BAAF04005951.1/319-236 8090:Oryzias latipes
(Japanese medaka)
Length = 84
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 50 tctcacagtgaaccggtctcttt 72
|||||||||||||||||||||||
Sbjct: 50 tctcacagtgaaccggtctcttt 72
