miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00678;mir-140;AADN02054178.1/9586-9683 9031:Gallus gallus
(chicken)
Length = 98
Score = 121 bits (61), Expect = 1e-27
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 1 ccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaaccacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20 ccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaaccacg 79
Query: 61 g 61
|
Sbjct: 80 g 80
>RF00678;mir-140;AAVX01038725.1/2937-3034 7868:Callorhinchus milii
(ghost shark)
Length = 98
Score = 121 bits (61), Expect = 1e-27
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 1 ccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaaccacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20 ccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaaccacg 79
Query: 61 g 61
|
Sbjct: 80 g 80
>RF00678;mir-140;ABRO01131757.1/4897-4800 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 98
Score = 111 bits (56), Expect = 9e-25
Identities = 59/60 (98%)
Strand = Plus / Plus
Query: 2 cagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaaccacgg 61
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 21 cagtggttttaccctatggtaggttacatcatgctgttctaccacagggtagaaccacgg 80
>RF00678;mir-140;BAAF04008549.1/880-978 8090:Oryzias latipes
(Japanese medaka)
Length = 99
Score = 103 bits (52), Expect = 2e-22
Identities = 58/60 (96%)
Strand = Plus / Plus
Query: 2 cagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaaccacgg 61
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 22 cagtggttttaccctatggtaggtgacatcatgctgttctaccacagggtagaaccacgg 81
