miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01896;mir-142;M31826.1/156-256 9606:Homo sapiens (human)
Length = 101
Score = 127 bits (64), Expect = 2e-29
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 1 acccataaagtagaaagcactactaacagcactggagggtgtagtgtttcctactttatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22 acccataaagtagaaagcactactaacagcactggagggtgtagtgtttcctactttatg 81
Query: 61 gatg 64
||||
Sbjct: 82 gatg 85
>RF01896;mir-142;AAGW01608371.1/689-584 9986:Oryctolagus cuniculus
(rabbit)
Length = 106
Score = 127 bits (64), Expect = 2e-29
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 1 acccataaagtagaaagcactactaacagcactggagggtgtagtgtttcctactttatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22 acccataaagtagaaagcactactaacagcactggagggtgtagtgtttcctactttatg 81
Query: 61 gatg 64
||||
Sbjct: 82 gatg 85
>RF01896;mir-142;AADN02026096.1/1575-1681 9031:Gallus gallus
(chicken)
Length = 107
Score = 105 bits (53), Expect = 6e-23
Identities = 63/65 (96%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 1 acccataaagtagaaagcactactaa-cagcactggagggtgtagtgtttcctactttat 59
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 22 acccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcctactttat 81
Query: 60 ggatg 64
|||||
Sbjct: 82 ggatg 86
>RF01896;mir-142;BAAF04037757.1/8225-8119 8090:Oryzias latipes
(Japanese medaka)
Length = 107
Score = 65.9 bits (33), Expect = 5e-11
Identities = 58/65 (89%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 1 acccataaagtagaaagcactact-aacagcactggagggtgtagtgtttcctactttat 59
|||||||||||||||||||||||| ||| |||| | |||||||||||||||||||||
Sbjct: 22 acccataaagtagaaagcactactaaacttcactatacagtgtagtgtttcctactttat 81
Query: 60 ggatg 64
|||||
Sbjct: 82 ggatg 86
>RF01896;mir-142;AAWZ01023107.1/41327-41220 28377:Anolis
carolinensis (green anole)
Length = 108
Score = 52.0 bits (26), Expect = 8e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 39 gtgtagtgtttcctactttatggatg 64
||||||||||||||||||||||||||
Sbjct: 62 gtgtagtgtttcctactttatggatg 87
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 3 ccataaagtagaaagcactactaa 26
||||||||||||||||||||||||
Sbjct: 24 ccataaagtagaaagcactactaa 47
>RF01896;mir-142;CU633486.9/28311-28205 7955:Danio rerio
(zebrafish)
Length = 107
Score = 52.0 bits (26), Expect = 8e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 39 gtgtagtgtttcctactttatggatg 64
||||||||||||||||||||||||||
Sbjct: 61 gtgtagtgtttcctactttatggatg 86
>RF01896;mir-142;BAAE01037208.1/1195-1089 8090:Oryzias latipes
(Japanese medaka)
Length = 107
Score = 52.0 bits (26), Expect = 8e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 39 gtgtagtgtttcctactttatggatg 64
||||||||||||||||||||||||||
Sbjct: 61 gtgtagtgtttcctactttatggatg 86
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 3 ccataaagtagaaagcactactaa 26
||||||||||||||||||||||||
Sbjct: 24 ccataaagtagaaagcactactaa 47
>RF01896;mir-142;AAVX01306460.1/1282-1378 7868:Callorhinchus milii
(ghost shark)
Length = 97
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 3 ccataaagtagaaagcactactaac 27
|||||||||||||||||||||||||
Sbjct: 24 ccataaagtagaaagcactactaac 48
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 39 gtgtagtgtttcctactttatgga 62
||||||||||||||||||||||||
Sbjct: 59 gtgtagtgtttcctactttatgga 82
