miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00683;mir-143;AAPE01221912.1/1898-1793 59463:Myotis lucifugus
(little brown bat)
Length = 106
Score = 119 bits (60), Expect = 4e-27
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 5 gaggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctcagg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25 gaggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctcagg 84
>RF00683;mir-143;AC148011.3/33883-33988 10090:Mus musculus (house
mouse)
Length = 106
Score = 119 bits (60), Expect = 4e-27
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 5 gaggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctcagg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25 gaggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctcagg 84
>RF00683;mir-143;AAFR03012464.1/24867-24972 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 106
Score = 113 bits (57), Expect = 3e-25
Identities = 60/61 (98%)
Strand = Plus / Plus
Query: 1 gcccgaggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagct 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 21 gcccgaggtgcagtgctgcatctctggtcagttgtgagtctgagatgaagcactgtagct 80
Query: 61 c 61
|
Sbjct: 81 c 81
>RF00683;mir-143;AAGW01160071.1/967-862 9986:Oryctolagus cuniculus
(rabbit)
Length = 106
Score = 113 bits (57), Expect = 3e-25
Identities = 57/57 (100%)
Strand = Plus / Plus
Query: 5 gaggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctc 61
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25 gaggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctc 81
>RF00683;mir-143;AAIY01705731.1/1779-1674 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 106
Score = 113 bits (57), Expect = 3e-25
Identities = 57/57 (100%)
Strand = Plus / Plus
Query: 5 gaggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctc 61
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25 gaggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctc 81
>RF00683;mir-143;AALT01067568.1/1202-1307 42254:Sorex araneus
(European shrew)
Length = 106
Score = 107 bits (54), Expect = 2e-23
Identities = 57/58 (98%)
Strand = Plus / Plus
Query: 7 ggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctcagg 64
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 27 ggtgcagtgctgcatctctggtcagctgggagtctgagatgaagcactgtagctcagg 84
>RF00683;mir-143;AAPN01425211.1/1518-1413 9258:Ornithorhynchus
anatinus (platypus)
Length = 106
Score = 105 bits (53), Expect = 6e-23
Identities = 59/61 (96%)
Strand = Plus / Plus
Query: 1 gcccgaggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagct 60
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 21 gcccaaggtgcagtgctgcatctctggtcagttgtgagtctgagatgaagcactgtagct 80
Query: 61 c 61
|
Sbjct: 81 c 81
>RF00683;mir-143;AAWZ01000591.1/16242-16347 28377:Anolis
carolinensis (green anole)
Length = 106
Score = 105 bits (53), Expect = 6e-23
Identities = 59/61 (96%)
Strand = Plus / Plus
Query: 1 gcccgaggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagct 60
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 21 gcccaaggtgcagtgctgcatctctggtcagttgtgagtctgagatgaagcactgtagct 80
Query: 61 c 61
|
Sbjct: 81 c 81
>RF00683;mir-143;CAAB01002152.1/24278-24172 31033:Takifugu
rubripes
Length = 107
Score = 101 bits (51), Expect = 1e-21
Identities = 54/55 (98%)
Strand = Plus / Plus
Query: 7 ggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctc 61
||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 27 ggtgcagtgctgcatctctggtcagttggtagtctgagatgaagcactgtagctc 81
>RF00683;mir-143;ABPL01011624.1/1446-1341 27751:Melanochromis
auratus
Length = 106
Score = 101 bits (51), Expect = 1e-21
Identities = 54/55 (98%)
Strand = Plus / Plus
Query: 7 ggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctc 61
||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 27 ggtgcagtgctgcatctctggtcagttggtagtctgagatgaagcactgtagctc 81
>RF00683;mir-143;AANH01007327.1/1417-1521 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 105
Score = 101 bits (51), Expect = 1e-21
Identities = 54/55 (98%)
Strand = Plus / Plus
Query: 7 ggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctc 61
||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 27 ggtgcagtgctgcatctctggtcagttggtagtctgagatgaagcactgtagctc 81
>RF00683;mir-143;CU234179.11/36731-36626 7955:Danio rerio
(zebrafish)
Length = 106
Score = 97.6 bits (49), Expect = 1e-20
Identities = 58/61 (95%)
Strand = Plus / Plus
Query: 1 gcccgaggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagct 60
||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 21 gcccgcggtgcagtgctgcatctctggtcaactgggagtctgagatgaagcactgtagct 80
Query: 61 c 61
|
Sbjct: 81 c 81
>RF00683;mir-143;AAVX01064725.1/2024-2127 7868:Callorhinchus milii
(ghost shark)
Length = 104
Score = 97.6 bits (49), Expect = 1e-20
Identities = 55/57 (96%)
Strand = Plus / Plus
Query: 5 gaggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctc 61
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 25 gaggtgcagtgctgcatctctggttagttgtgagtctgagatgaagcactgtagctc 81
>RF00683;mir-143;BAAE01019938.1/1252-1147 8090:Oryzias latipes
(Japanese medaka)
Length = 106
Score = 93.7 bits (47), Expect = 2e-19
Identities = 53/55 (96%)
Strand = Plus / Plus
Query: 7 ggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctc 61
|||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 27 ggtgcagtgctgcatctctggtcagttgatagtctgagatgaagcactgtagctc 81
