miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00682;mir-144;AAGU02141945.1/2203-2119 9785:Loxodonta africana
(African savanna elephant)
Length = 85
Score = 123 bits (62), Expect = 3e-28
Identities = 65/66 (98%)
Strand = Plus / Plus
Query: 1 ggctgggatatcatcatatactgtaagtttgcgatgagacactacagtatagatgatgta 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 10 ggctgggatatcatcatatactgtaagtttgtgatgagacactacagtatagatgatgta 69
Query: 61 ctagtc 66
||||||
Sbjct: 70 ctagtc 75
>RF00682;mir-144;AAFR03044825.1/5551-5467 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 85
Score = 99.6 bits (50), Expect = 4e-21
Identities = 56/58 (96%)
Strand = Plus / Plus
Query: 5 gggatatcatcatatactgtaagtttgcgatgagacactacagtatagatgatgtact 62
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 14 gggatatcatcgtatactgtaagtttgcaatgagacactacagtatagatgatgtact 71
>RF00682;mir-144;ABQO010853698.1/933-849 9315:Macropus eugenii
(tammar wallaby)
Length = 85
Score = 97.6 bits (49), Expect = 2e-20
Identities = 55/57 (96%)
Strand = Plus / Plus
Query: 6 ggatatcatcatatactgtaagtttgcgatgagacactacagtatagatgatgtact 62
|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 15 ggatatcatcgtatactgtaagtttgcaatgagacactacagtatagatgatgtact 71
>RF00682;mir-144;ABQF01026376.1/1068-984 59729:Taeniopygia guttata
Length = 85
Score = 89.7 bits (45), Expect = 4e-18
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 6 ggatatcatcatatactgtaagtttgcgatgagacactacagtatagatgatgtact 62
|||||||||| ||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 15 ggatatcatcgtatactgtaagttggctatgagacactacagtatagatgatgtact 71
>RF00682;mir-144;AADN02025858.1/339-423 9031:Gallus gallus
(chicken)
Length = 85
Score = 89.7 bits (45), Expect = 4e-18
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 6 ggatatcatcatatactgtaagtttgcgatgagacactacagtatagatgatgtact 62
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 15 ggatatcatcatatactgtaagttcactatgagacactacagtatagatgatgtact 71
>RF00682;mir-144;BC152081.1/387-472 7955:Danio rerio (zebrafish)
Length = 86
Score = 61.9 bits (31), Expect = 9e-10
Identities = 53/59 (89%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 6 ggatatcatcatatactgtaagtttgcgat-gagacactacagtatagatgatgtacta 63
|||||||||| ||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 15 ggatatcatcgtatactgtaagttcattattgagacactacagtatagatgatgtacta 73
>RF00682;mir-144;BAAF04033966.1/3629-3714 8090:Oryzias latipes
(Japanese medaka)
Length = 86
Score = 61.9 bits (31), Expect = 9e-10
Identities = 53/59 (89%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 6 ggatatcatcatatactgtaagtttgcgat-gagacactacagtatagatgatgtacta 63
|||||||||| |||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 15 ggatatcatcttatactgtaagtttaataaagagacactacagtatagatgatgtacta 73
>RF00682;mir-144;AAVX01587350.1/53-138 7868:Callorhinchus milii
(ghost shark)
Length = 86
Score = 61.9 bits (31), Expect = 9e-10
Identities = 53/59 (89%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 6 ggatatcatcatatactgtaagtttgcgatg-agacactacagtatagatgatgtacta 63
||||||||||||||| |||||||| | || |||||||||||||||||||||||||||
Sbjct: 15 ggatatcatcatatattgtaagttcacaattcagacactacagtatagatgatgtacta 73
