miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00675;mir-145;AAGW01611070.1/1144-1232 9986:Oryctolagus
cuniculus (rabbit)
Length = 89
Score = 129 bits (65), Expect = 5e-30
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 6 ggtccagttttcccaggaatcccttagatgctaagatggggattcctggaaatactgttc 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16 ggtccagttttcccaggaatcccttagatgctaagatggggattcctggaaatactgttc 75
Query: 66 ttgag 70
|||||
Sbjct: 76 ttgag 80
>RF00675;mir-145;ABRQ01509527.1/1427-1341 9813:Procavia capensis
(cape rock hyrax)
Length = 87
Score = 123 bits (62), Expect = 3e-28
Identities = 68/70 (97%)
Strand = Plus / Plus
Query: 1 ctcacggtccagttttcccaggaatcccttagatgctaagatggggattcctggaaatac 60
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 10 ctcacggtccagttttcccaggaatcccttacatgctaagacggggattcctggaaatac 69
Query: 61 tgttcttgag 70
||||||||||
Sbjct: 70 tgttcttgag 79
>RF00675;mir-145;AAWZ01000591.1/17482-17570 28377:Anolis
carolinensis (green anole)
Length = 89
Score = 109 bits (55), Expect = 4e-24
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 6 ggtccagttttcccaggaatcccttagatgctaagatggggattcctggaaatactgttc 65
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 16 ggtccagttttcccaggaatcccttagatgataagagggggattcctggaaatactgttc 75
Query: 66 ttg 68
|||
Sbjct: 76 ttg 78
>RF00675;mir-145;AANG01343499.1/5356-5446 9685:Felis catus
(domestic cat)
Length = 91
Score = 97.6 bits (49), Expect = 2e-20
Identities = 70/73 (95%), Gaps = 3/73 (4%)
Strand = Plus / Plus
Query: 1 ctcacggtccagtttt-cccaggaatcccttagatgctaagat-ggggatt-cctggaaa 57
|||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 10 ctcacggtccagtttttcccaggaatcccttagatgctaagatgggggattccctggaaa 69
Query: 58 tactgttcttgag 70
|||||||||||||
Sbjct: 70 tactgttcttgag 82
>RF00675;mir-145;CT029999.12/82723-82635 7955:Danio rerio
(zebrafish)
Length = 89
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 43 ggggattcctggaaatactgttcttg 68
||||||||||||||||||||||||||
Sbjct: 53 ggggattcctggaaatactgttcttg 78
>RF00675;mir-145;AANH01007327.1/2171-2260 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 90
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 43 ggggattcctggaaatactgttcttg 68
||||||||||||||||||||||||||
Sbjct: 54 ggggattcctggaaatactgttcttg 79
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 6 ggtccagttttcccaggaatccctt 30
|||||||||||||||||||||||||
Sbjct: 15 ggtccagttttcccaggaatccctt 39
>RF00675;mir-145;BAAF04072768.1/17019-16930 8090:Oryzias latipes
(Japanese medaka)
Length = 90
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 6 ggtccagttttcccaggaatccctt 30
|||||||||||||||||||||||||
Sbjct: 15 ggtccagttttcccaggaatccctt 39
