miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00691;mir-146;AAKN02022618.1/8712-8798 10141:Cavia porcellus
(domestic guinea pig)
Length = 87
Score = 121 bits (61), Expect = 1e-27
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 1 agctttgagaactgaattccatgggttgtgtcagcgtcagacctgtgaagttcagttctt 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 11 agctttgagaactgaattccatgggttgtgtcagcgtcagacctgtgaaattcagttctt 70
Query: 61 cagct 65
|||||
Sbjct: 71 cagct 75
>RF00691;mir-146;ABRQ01081253.1/1221-1135 9813:Procavia capensis
(cape rock hyrax)
Length = 87
Score = 97.6 bits (49), Expect = 2e-20
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 1 agctttgagaactgaattccatgggttgtgtcagcgtcagacctgtgaagttcagttctt 60
|||||||||||||||||||||||||| || |||| |||||||||||| ||||||||||||
Sbjct: 11 agctttgagaactgaattccatgggtcgtctcagtgtcagacctgtggagttcagttctt 70
Query: 61 cagct 65
|||||
Sbjct: 71 cagct 75
>RF00691;mir-146;CAAA01220328.1/4488-4574 10090:Mus musculus
(house mouse)
Length = 87
Score = 81.8 bits (41), Expect = 9e-16
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 1 agctttgagaactgaattccatgggttgtgtcagcgtcagacctgtgaagttcagttctt 60
|||| |||||||||||||||||||||| | ||| |||||||||||||| ||||||||||
Sbjct: 11 agctctgagaactgaattccatgggttatatcaatgtcagacctgtgaaattcagttctt 70
Query: 61 cagct 65
|||||
Sbjct: 71 cagct 75
>RF00691;mir-146;AAFR03012754.1/25474-25388 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 87
Score = 65.9 bits (33), Expect = 5e-11
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 1 agctttgagaactgaattccatgggttgtgtcagcgtcagacctgtgaagttcagttctt 60
||||||||||||||||||||||||||||| | | |||||||| |||| |||||||||
Sbjct: 11 agctttgagaactgaattccatgggttgtctttgtatcagacctatgaaactcagttctt 70
Query: 61 cagct 65
|||||
Sbjct: 71 cagct 75
>RF00691;mir-146;ABQF01019538.1/14288-14195 59729:Taeniopygia
guttata
Length = 94
Score = 58.0 bits (29), Expect = 1e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 1 agctttgagaactgaattccatgggttgt 29
|||||||||||||||||||||||||||||
Sbjct: 11 agctttgagaactgaattccatgggttgt 39
>RF00691;mir-146;AADN02035864.1/43695-43788 9031:Gallus gallus
(chicken)
Length = 94
Score = 58.0 bits (29), Expect = 1e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 1 agctttgagaactgaattccatgggttgt 29
|||||||||||||||||||||||||||||
Sbjct: 11 agctttgagaactgaattccatgggttgt 39
>RF00691;mir-146;AAPN01152393.1/27352-27260 9258:Ornithorhynchus
anatinus (platypus)
Length = 93
Score = 52.0 bits (26), Expect = 8e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 agctttgagaactgaattccatgggttgtg 30
||||||||||||||||||||| ||||||||
Sbjct: 11 agctttgagaactgaattccacgggttgtg 40
>RF00691;mir-146;AADN02030809.1/7252-7342 9031:Gallus gallus
(chicken)
Length = 91
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 2 gctttgagaactgaattccat 22
|||||||||||||||||||||
Sbjct: 12 gctttgagaactgaattccat 32
>RF00691;mir-146;CAAK05045699.1/2034-2122 7955:Danio rerio
(zebrafish)
Length = 89
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 2 gctttgagaactgaattccatgggt 26
|||||||||||||||||||| ||||
Sbjct: 12 gctttgagaactgaattccaagggt 36
>RF00691;mir-146;AAVX01275541.1/618-713 7868:Callorhinchus milii
(ghost shark)
Length = 96
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 agctttgagaactgaattccatggg 25
|||| ||||||||||||||||||||
Sbjct: 11 agctgtgagaactgaattccatggg 35
