miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00691;mir-146;AAIY01333564.1/1864-1775 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 90
Score = 123 bits (62), Expect = 3e-28
Identities = 71/74 (95%)
Strand = Plus / Plus
Query: 1 cctggctctgagaactgaattccataggctgtgagctccagcaaatgccctagggactca 60
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 8 cctggctctgagaactgaattccataggctgtgagctctagcaaatgccctaggagctca 67
Query: 61 gttctggtgcccgg 74
||||||||||||||
Sbjct: 68 gttctggtgcccgg 81
>RF00691;mir-146;ABRQ01378994.1/1874-1963 9813:Procavia capensis
(cape rock hyrax)
Length = 90
Score = 123 bits (62), Expect = 3e-28
Identities = 71/74 (95%)
Strand = Plus / Plus
Query: 1 cctggctctgagaactgaattccataggctgtgagctccagcaaatgccctagggactca 60
|||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 8 cctggccctgagaactgaattccataggctgtgagctctagcaaatgccctaggaactca 67
Query: 61 gttctggtgcccgg 74
||||||||||||||
Sbjct: 68 gttctggtgcccgg 81
>RF00691;mir-146;ABDC01238493.1/6154-6243 30608:Microcebus murinus
(gray mouse lemur)
Length = 90
Score = 117 bits (59), Expect = 2e-26
Identities = 68/71 (95%)
Strand = Plus / Plus
Query: 1 cctggctctgagaactgaattccataggctgtgagctccagcaaatgccctagggactca 60
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 8 cctggctctgagaactgaattccataggctgtgagctctagtgaatgccctagggactca 67
Query: 61 gttctggtgcc 71
|||||||||||
Sbjct: 68 gttctggtgcc 78
>RF00691;mir-146;AANG01052378.1/2905-2994 9685:Felis catus
(domestic cat)
Length = 90
Score = 115 bits (58), Expect = 8e-26
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 1 cctggctctgagaactgaattccataggctgtgagctccagcaaatgccctagggactca 60
|||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 8 cctggctctgagaactgaattccataggctgtaagctcaagcaaatggcctagggactca 67
Query: 61 gttctggtgc 70
||||||||||
Sbjct: 68 gttctggtgc 77
>RF00691;mir-146;AAGU02025916.1/485-574 9785:Loxodonta africana
(African savanna elephant)
Length = 90
Score = 115 bits (58), Expect = 8e-26
Identities = 70/74 (94%)
Strand = Plus / Plus
Query: 1 cctggctctgagaactgaattccataggctgtgagctccagcaaatgccctagggactca 60
|||||||||||||||||||||||||||||||||| ||| |||| |||||||||| |||||
Sbjct: 8 cctggctctgagaactgaattccataggctgtgaactctagcagatgccctaggaactca 67
Query: 61 gttctggtgcccgg 74
||||||||||||||
Sbjct: 68 gttctggtgcccgg 81
>RF00691;mir-146;AAEX02015545.1/16918-16829 9615:Canis lupus
familiaris (dog)
Length = 90
Score = 107 bits (54), Expect = 2e-23
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 1 cctggctctgagaactgaattccataggctgtgagctccagcaaatgccctagggactca 60
||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 8 cctggctctgagaactgaattccataggctgtgagcttgagcaaacagcctagggactca 67
Query: 61 gttctggtgcccgg 74
||||||||||||||
Sbjct: 68 gttctggtgcccgg 81
>RF00691;mir-146;AAYZ01153033.1/3261-3350 9978:Ochotona princeps
(American pika)
Length = 90
Score = 101 bits (51), Expect = 1e-21
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 1 cctggctctgagaactgaattccataggctgtgagctccagcaaatgccctagggactca 60
|||||||||||||||||||||| |||||| |||||||| |||| || |||||||||||||
Sbjct: 8 cctggctctgagaactgaattctataggccgtgagctctagcagataccctagggactca 67
Query: 61 gttctggtgcc 71
|||||||||||
Sbjct: 68 gttctggtgcc 78
>RF00691;mir-146;AAFR03025019.1/59830-59741 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 90
Score = 99.6 bits (50), Expect = 5e-21
Identities = 62/66 (93%)
Strand = Plus / Plus
Query: 2 ctggctctgagaactgaattccataggctgtgagctccagcaaatgccctagggactcag 61
||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||
Sbjct: 9 ctggctctgagaactgaattccataggctgtgagctcatgcaaatgccctaggaagtcag 68
Query: 62 ttctgg 67
||||||
Sbjct: 69 ttctgg 74
>RF00691;mir-146;ABBA01063157.1/877-789 9606:Homo sapiens (human)
Length = 89
Score = 99.6 bits (50), Expect = 5e-21
Identities = 69/74 (93%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 cctggctctgagaactgaattccataggctgtgagctccagcaaatgccctagggactca 60
|||||| ||||||||||||||||||||||||||||||| ||| |||||||| |||||||
Sbjct: 8 cctggcactgagaactgaattccataggctgtgagctctagc-aatgccctgtggactca 66
Query: 61 gttctggtgcccgg 74
||||||||||||||
Sbjct: 67 gttctggtgcccgg 80
>RF00691;mir-146;AAKN02016522.1/10507-10417 10141:Cavia porcellus
(domestic guinea pig)
Length = 91
Score = 91.7 bits (46), Expect = 1e-18
Identities = 61/66 (92%)
Strand = Plus / Plus
Query: 2 ctggctctgagaactgaattccataggctgtgagctccagcaaatgccctagggactcag 61
|||||| | |||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 9 ctggctttaagaactgaattctgtaggctgtgagctccagcaaatgccttagggactcag 68
Query: 62 ttctgg 67
||||||
Sbjct: 69 ttctgg 74
>RF00691;mir-146;ABRO01069912.1/224-312 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 89
Score = 75.8 bits (38), Expect = 7e-14
Identities = 66/74 (89%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 cctggctctgagaactgaattccataggctgtgagctccagcaaatgccctagggactca 60
||||||||||||||||||||||||||||| ||||||| ||| ||||||||||| | |||
Sbjct: 8 cctggctctgagaactgaattccataggccgtgagctttagc-aatgccctaggaattca 66
Query: 61 gttctggtgcccgg 74
||||| | ||||||
Sbjct: 67 gttctagcgcccgg 80
>RF00691;mir-146;ABRQ01105150.1/1426-1514 9813:Procavia capensis
(cape rock hyrax)
Length = 89
Score = 73.8 bits (37), Expect = 3e-13
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 8 ctgagaactgaattccataggctgtgagctccagcaaatgccctagggactcagttctgg 67
||||||||||||| |||||||| |||||| | |||| || ||||||| ||||||||||||
Sbjct: 14 ctgagaactgaatgccataggcagtgagcgctagcagataccctaggaactcagttctgg 73
Query: 68 tgccc 72
|||||
Sbjct: 74 tgccc 78
>RF00691;mir-146;AAPN01141106.1/3079-3169 9258:Ornithorhynchus
anatinus (platypus)
Length = 91
Score = 65.9 bits (33), Expect = 6e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 3 tggctctgagaactgaattccataggctgtgag 35
|||||||||||||||||||||||||||||||||
Sbjct: 11 tggctctgagaactgaattccataggctgtgag 43
>RF00691;mir-146;ABQF01027036.1/15002-14913 59729:Taeniopygia
guttata
Length = 90
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 3 tggctctgagaactgaattccataggc 29
|||||||||||||||||||||||||||
Sbjct: 10 tggctctgagaactgaattccataggc 36
>RF00691;mir-146;AAWZ01011696.1/200150-200239 28377:Anolis
carolinensis (green anole)
Length = 90
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 5 gctctgagaactgaattccataggct 30
||||||||||||||||||||||||||
Sbjct: 12 gctctgagaactgaattccataggct 37
>RF00691;mir-146;AADN02030809.1/7252-7342 9031:Gallus gallus
(chicken)
Length = 91
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 3 tggctctgagaactgaattccataggc 29
||||| |||||||||||||||||||||
Sbjct: 10 tggctttgagaactgaattccataggc 36
>RF00691;mir-146;CAAA01220328.1/4488-4574 10090:Mus musculus
(house mouse)
Length = 87
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 5 gctctgagaactgaattccat 25
|||||||||||||||||||||
Sbjct: 12 gctctgagaactgaattccat 32
>RF00691;mir-146;AADN02043396.1/1249-1345 9031:Gallus gallus
(chicken)
Length = 97
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 5 gctctgagaactgaattccat 25
|||||||||||||||||||||
Sbjct: 14 gctctgagaactgaattccat 34
