miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00693;mir-147;AAWR02019028.1/76654-76723 9796:Equus caballus
(horse)
Length = 70
Score = 139 bits (70), Expect = 6e-33
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 5 aatgttaaggagaccattctgcacaaactggagtatggatatcagtgtgccgaaatgctt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aatgttaaggagaccattctgcacaaactggagtatggatatcagtgtgccgaaatgctt 60
Query: 65 ctgctacatt 74
||||||||||
Sbjct: 61 ctgctacatt 70
>RF00693;mir-147;AAFC03018591.1/6229-6298 9913:Bos taurus (cattle)
Length = 70
Score = 60.0 bits (30), Expect = 4e-09
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 21 ttctgcacaaactggagtatggatatcagtgtgccgaaatgcttctgctacatt 74
||||||||||||| || |||||||| || |||||| |||||||| |||||||||
Sbjct: 17 ttctgcacaaactcgattatggataccaatgtgccaaaatgcttttgctacatt 70
>RF00693;mir-147;ABRQ01122655.1/595-663 9813:Procavia capensis
(cape rock hyrax)
Length = 69
Score = 60.0 bits (30), Expect = 4e-09
Identities = 49/54 (90%), Gaps = 1/54 (1%)
Strand = Plus / Plus
Query: 21 ttctgcacaaactggagtatggatatcagtgtgccgaaatgcttctgctacatt 74
||||||||||||| || |||||||| |||||||| ||| |||||||||||||||
Sbjct: 17 ttctgcacaaactagattatggata-cagtgtgcggaagtgcttctgctacatt 69
>RF00693;mir-147;BX934528.1/415-484 9031:Gallus gallus (chicken)
Length = 70
Score = 60.0 bits (30), Expect = 4e-09
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 21 ttctgcacaaactggagtatggatatcagtgtgccgaaatgcttctgctacatt 74
||||||||||||| || || || |||||||||| |||||||||||||||||||
Sbjct: 17 ttctgcacaaacttgactactgaaatcagtgtgcggaaatgcttctgctacatt 70
>RF00693;mir-147;AAGV020068496.1/506-569 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 64
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 38 tatggatatcagtgtgccgaaatgcttctgct 69
||||||||||||||||| ||||||||||||||
Sbjct: 28 tatggatatcagtgtgcagaaatgcttctgct 59
>RF00693;mir-147;AAHX01006722.1/12190-12258 10116:Rattus
norvegicus (Norway rat)
Length = 69
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 47 cagtgtgccgaaatgcttctgctacatt 74
|||||||| |||||||||||||||||||
Sbjct: 42 cagtgtgcagaaatgcttctgctacatt 69
>RF00693;mir-147;AANG01714059.1/489-419 9685:Felis catus (domestic
cat)
Length = 71
Score = 46.1 bits (23), Expect = 7e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 21 ttctgcacaaactggagtatggatatcagtgtgcc 55
||||||||||||| || |||||||| |||||||||
Sbjct: 17 ttctgcacaaactagattatggataccagtgtgcc 51
