miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00248;mir-148;AAGU02053377.1/4604-4519 9785:Loxodonta africana
(African savanna elephant)
Length = 86
Score = 127 bits (64), Expect = 2e-29
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 1 gaggcaaagttctgagacactccgactctgaatatgatagaagtcagtgcactacagaac 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 10 gaggcaaagttctgagacactccgactctgagtatgatagaagtcagtgcactacagaac 69
Query: 61 tttgtctc 68
||||||||
Sbjct: 70 tttgtctc 77
>RF00248;mir-148;AAFR03047726.1/72700-72785 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 86
Score = 103 bits (52), Expect = 3e-22
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 1 gaggcaaagttctgagacactccgactctgaatatgatagaagtcagtgcactacagaac 60
|||||||||||||| ||||||| |||||||| || |||||||||||||||||||||||||
Sbjct: 10 gaggcaaagttctgggacactcagactctgattaggatagaagtcagtgcactacagaac 69
Query: 61 tttgtctc 68
||||||||
Sbjct: 70 tttgtctc 77
>RF00248;mir-148;AAWZ01008895.1/29849-29934 28377:Anolis
carolinensis (green anole)
Length = 86
Score = 101 bits (51), Expect = 1e-21
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 4 gcaaagttctgagacactccgactctgaatatgatagaagtcagtgcactacagaacttt 63
||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 13 gcaaagttctgtgacactcggactctgattatgatagaagtcagtgcactacagaacttt 72
Query: 64 gtc 66
|||
Sbjct: 73 gtc 75
>RF00248;mir-148;AADN02000964.1/27361-27276 9031:Gallus gallus
(chicken)
Length = 86
Score = 81.8 bits (41), Expect = 1e-15
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 4 gcaaagttctgagacactccgactctgaatatgatagaagtcagtgcactacagaacttt 63
||||||||||| ||||||| ||||||| || ||||| ||||||||||||||||||||||
Sbjct: 13 gcaaagttctgtgacactcagactctggttacgatagcagtcagtgcactacagaacttt 72
Query: 64 gtctc 68
|||||
Sbjct: 73 gtctc 77
>RF00248;mir-148;AALT01103337.1/950-865 42254:Sorex araneus
(European shrew)
Length = 86
Score = 79.8 bits (40), Expect = 4e-15
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 13 tgagacactccgactctgaatatgatagaagtcagtgcactacagaactttgtctc 68
||||||||||||||||||| || ||||| |||||||||||||||||| ||||||||
Sbjct: 22 tgagacactccgactctgagtaggatagcagtcagtgcactacagaattttgtctc 77
>RF00248;mir-148;ABQO010009990.1/1-63 9315:Macropus eugenii
(tammar wallaby)
Length = 63
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 39 agaagtcagtgcactacagaactttgtc 66
||||||||||||||||||||||||||||
Sbjct: 36 agaagtcagtgcactacagaactttgtc 63
>RF00248;mir-148;CU104777.4/16075-15990 7955:Danio rerio
(zebrafish)
Length = 86
Score = 44.1 bits (22), Expect = 2e-04
Identities = 43/49 (87%), Gaps = 2/49 (4%)
Strand = Plus / Plus
Query: 17 acactccgactctgaatatgatagaagtcagtgcactacagaactttgt 65
||||||||||||||||| | | | |||||||||| |||||||||||||
Sbjct: 28 acactccgactctgaatgt--ttgcagtcagtgcattacagaactttgt 74
>RF00248;mir-148;AAWZ01034152.1/31480-31394 28377:Anolis
carolinensis (green anole)
Length = 87
Score = 42.1 bits (21), Expect = 8e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 40 gaagtcagtgcactacagaactttgtctc 68
|||||||||||| |||||||||||||||
Sbjct: 50 gaagtcagtgcatcacagaactttgtctc 78
>RF00248;mir-148;AC149872.2/128226-128140 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 87
Score = 42.1 bits (21), Expect = 8e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 40 gaagtcagtgcactacagaactttgtctc 68
|||||||||||| |||||||||||||||
Sbjct: 50 gaagtcagtgcatcacagaactttgtctc 78
