miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00248;mir-148;ABRQ01025756.1/6963-6877 9813:Procavia capensis
(cape rock hyrax)
Length = 87
Score = 157 bits (79), Expect = 3e-38
Identities = 82/83 (98%)
Strand = Plus / Plus
Query: 1 agcatttgaggtgaagttctgttatacactcaggctgtggctctctgaaagtcagtgcat 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 3 agcatttgaggtgaagttctgttatacactcaggctgtggctctgtgaaagtcagtgcat 62
Query: 61 cacagaactttgtctcgaaagct 83
|||||||||||||||||||||||
Sbjct: 63 cacagaactttgtctcgaaagct 85
>RF00248;mir-148;AAWZ01034152.1/31480-31394 28377:Anolis
carolinensis (green anole)
Length = 87
Score = 107 bits (54), Expect = 2e-23
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 6 ttgaggtgaagttctgttatacactcaggctgtggctctctgaaagtcagtgcatcacag 65
|||||||||||||||||||||||||| | |||||||| | || |||||||||||||||||
Sbjct: 8 ttgaggtgaagttctgttatacactctgactgtggctatgtggaagtcagtgcatcacag 67
Query: 66 aactttgtctcgaaagct 83
||||||||||||| ||||
Sbjct: 68 aactttgtctcgagagct 85
>RF00248;mir-148;AC149872.2/128226-128140 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 87
Score = 91.7 bits (46), Expect = 1e-18
Identities = 67/74 (90%)
Strand = Plus / Plus
Query: 5 tttgaggtgaagttctgttatacactcaggctgtggctctctgaaagtcagtgcatcaca 64
||||||||||||||||||||||||||| ||||||| | || ||||||||||||||||
Sbjct: 7 tttgaggtgaagttctgttatacactccggctgtgagtaagtggaagtcagtgcatcaca 66
Query: 65 gaactttgtctcga 78
||||||||||||||
Sbjct: 67 gaactttgtctcga 80
>RF00248;mir-148;AAVX01081695.1/240-153 7868:Callorhinchus milii
(ghost shark)
Length = 88
Score = 69.9 bits (35), Expect = 5e-12
Identities = 60/67 (89%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 12 tgaagttctgttatacactcaggctgtggctctctgaaagtcagtgcatcacagaacttt 71
||||||||||| ||||||||||||||| ||| || |||||||||||||||||||||||
Sbjct: 14 tgaagttctgtcatacactcaggctgtagctaa-tggaagtcagtgcatcacagaacttt 72
Query: 72 gtctcga 78
| |||||
Sbjct: 73 gactcga 79
>RF00248;mir-148;AAVX01026781.1/2013-1926 7868:Callorhinchus milii
(ghost shark)
Length = 88
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 47 gaaagtcagtgcatcacagaactttgtct 75
|||||||||||||| ||||||||||||||
Sbjct: 50 gaaagtcagtgcataacagaactttgtct 78
>RF00248;mir-148;AANH01009869.1/35146-35060 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 14 aagttctgttatacactcaggctgtggctctctgaaagtcagtgcatcacagaactttgt 73
||||||||| |||||||| | ||||| ||| || ||||||||||| |||||||||||
Sbjct: 16 aagttctgtgatacactctgactgtgaatctatgctagtcagtgcataacagaactttgc 75
Query: 74 ctcg 77
||||
Sbjct: 76 ctcg 79
>RF00248;mir-148;ABPM01044053.1/712-797 106582:Maylandia zebra
(zebra mbuna)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 50 agtcagtgcatcacagaactttgtctcgaaagct 83
||||||||||| |||||||||||| ||| |||||
Sbjct: 51 agtcagtgcattacagaactttgtttcggaagct 84
