miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00767;mir-150;ABRP01053071.1/5653-5737 132908:Pteropus vampyrus
(large flying fox)
Length = 85
Score = 105 bits (53), Expect = 6e-23
Identities = 62/65 (95%)
Strand = Plus / Plus
Query: 1 ccctgtctcccaacccttgtaccagtgctgtgcctcggtccctggtacaggcatgggggg 60
||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 11 ccctgtctcccaacccttgtaccagtggtgtgctgcggtccctggtacaggcatgggggg 70
Query: 61 caggg 65
|||||
Sbjct: 71 caggg 75
>RF00767;mir-150;AAKN02046407.1/61619-61703 10141:Cavia porcellus
(domestic guinea pig)
Length = 85
Score = 97.6 bits (49), Expect = 2e-20
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 1 ccctgtctcccaacccttgtaccagtgctgtgcctcggtccctggtacaggcatgggggg 60
|||||||||||||||||||||||||||||||||||| | | ||||||||||| |||||||
Sbjct: 11 ccctgtctcccaacccttgtaccagtgctgtgcctcagacgctggtacaggcctgggggg 70
Query: 61 caggg 65
|||||
Sbjct: 71 caggg 75
>RF00767;mir-150;AC126256.4/165920-166004 10090:Mus musculus
(house mouse)
Length = 85
Score = 93.7 bits (47), Expect = 2e-19
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 1 ccctgtctcccaacccttgtaccagtgctgtgcctcggtccctggtacaggcatggggg 59
|||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||
Sbjct: 11 ccctgtctcccaacccttgtaccagtgctgtgcctcagaccctggtacaggcctggggg 69
>RF00767;mir-150;AAFC03061346.1/17848-17932 9913:Bos taurus
(cattle)
Length = 85
Score = 61.9 bits (31), Expect = 8e-10
Identities = 47/51 (92%), Gaps = 1/51 (1%)
Strand = Plus / Plus
Query: 1 ccctgtctcccaacccttgtaccagtgctgtgcctcggtccctggtacagg 51
||||||||||||||||||||||||||| |||| ||| | ||||||||||||
Sbjct: 11 ccctgtctcccaacccttgtaccagtg-tgtgtctcagaccctggtacagg 60
>RF00767;mir-150;AALT01365871.1/7873-7792 42254:Sorex araneus
(European shrew)
Length = 82
Score = 52.0 bits (26), Expect = 8e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 ccctgtctcccaacccttgtaccagtgctg 30
||||||||||||||||||||||||| ||||
Sbjct: 11 ccctgtctcccaacccttgtaccagcgctg 40
>RF00767;mir-150;AAWZ01021503.1/15832-15746 28377:Anolis
carolinensis (green anole)
Length = 87
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 ccctgtctcccaacccttgtaccagtgc 28
|||| |||||||||||||||||||||||
Sbjct: 9 ccctctctcccaacccttgtaccagtgc 36
>RF00767;mir-150;AAYZ01332954.1/116-31 9978:Ochotona princeps
(American pika)
Length = 86
Score = 46.1 bits (23), Expect = 5e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 ccctgtctcccaacccttgtaccagtg 27
||||||||||||||||| |||||||||
Sbjct: 11 ccctgtctcccaaccctcgtaccagtg 37
>RF00767;mir-150;AAVX01101656.1/398-309 7868:Callorhinchus milii
(ghost shark)
Length = 90
Score = 46.1 bits (23), Expect = 5e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 ccctgtctcccaacccttgtaccagtg 27
|||| ||||||||||||||||||||||
Sbjct: 13 ccctctctcccaacccttgtaccagtg 39
>RF00767;mir-150;AAPY01553607.1/1213-1296 37347:Tupaia belangeri
(northern tree shrew)
Length = 84
Score = 42.1 bits (21), Expect = 8e-04
Identities = 52/61 (85%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 5 gtctcccaacccttgtaccagtgctgtgcctcggtccctggtacaggcatggggggcagg 64
||||||||||||| ||||||| || ||| || | ||||||| |||| ||||||||||||
Sbjct: 15 gtctcccaaccctcgtaccagggccatgc-tcagaccctggtgcagggatggggggcagg 73
Query: 65 g 65
|
Sbjct: 74 g 74
