miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00655;mir-28;AAGW01696220.1/775-851 9986:Oryctolagus cuniculus
(rabbit)
Length = 77
Score = 137 bits (69), Expect = 2e-32
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 1 cctgccctcgaggagctcacagtctagtatgtctcatcccctactagactgaagctcctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 cctgccctcgaggagctcacagtctagtatgtctcatcccctactagactgaagctcctt 64
Query: 61 gaggacagg 69
|||||||||
Sbjct: 65 gaggacagg 73
>RF00917;mir-708;AAGU02375962.1/1414-1485 9785:Loxodonta africana
(African savanna elephant)
Length = 72
Score = 121 bits (61), Expect = 1e-27
Identities = 67/69 (97%)
Strand = Plus / Minus
Query: 1 cctgccctcgaggagctcacagtctagtatgtctcatcccctactagactgaagctcctt 60
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 70 cctgccctcgaggagctcacagtctagtatgtgccatcccctactagactgaagctcctt 11
Query: 61 gaggacagg 69
|||||||||
Sbjct: 10 gaggacagg 2
>RF00917;mir-708;ABRQ01255356.1/770-840 9813:Procavia capensis
(cape rock hyrax)
Length = 71
Score = 81.8 bits (41), Expect = 1e-15
Identities = 63/69 (91%), Gaps = 1/69 (1%)
Strand = Plus / Minus
Query: 1 cctgccctcgaggagctcacagtctagtatgtctcatcccctactagactgaagctcctt 60
|||||||||||||||||||||||||||| ||| ||||||| |||||||||| ||||||
Sbjct: 69 cctgccctcgaggagctcacagtctagtgtgtgccatcccc-actagactgaggctcctg 11
Query: 61 gaggacagg 69
|||||||||
Sbjct: 10 gaggacagg 2
>RF00655;mir-28;ABRQ01255356.1/842-767 9813:Procavia capensis
(cape rock hyrax)
Length = 76
Score = 81.8 bits (41), Expect = 1e-15
Identities = 63/69 (91%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 1 cctgccctcgaggagctcacagtctagtatgtctcatcccctactagactgaagctcctt 60
|||||||||||||||||||||||||||| ||| ||||||| |||||||||| ||||||
Sbjct: 5 cctgccctcgaggagctcacagtctagtgtgtgccatcccc-actagactgaggctcctg 63
Query: 61 gaggacagg 69
|||||||||
Sbjct: 64 gaggacagg 72
>RF00917;mir-708;AAIY01415377.1/489-558 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 70
Score = 75.8 bits (38), Expect = 6e-14
Identities = 62/69 (89%), Gaps = 2/69 (2%)
Strand = Plus / Minus
Query: 1 cctgccctcgaggagctcacagtctagtatgtctcatcccctactagactgaagctcctt 60
||||||||||||||||||||||||||||| || || ||||||||||||| |||||||
Sbjct: 68 cctgccctcgaggagctcacagtctagtacgtgcca--ccctactagactggcgctcctt 11
Query: 61 gaggacagg 69
|||||||||
Sbjct: 10 gaggacagg 2
>RF00917;mir-708;ABRQ01069155.1/911-831 9813:Procavia capensis
(cape rock hyrax)
Length = 81
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1 cctgccctcgaggagctcacagtcta 26
||||||||| ||||||||||||||||
Sbjct: 79 cctgccctcaaggagctcacagtcta 54
>RF00655;mir-28;ABRQ01069155.1/829-914 9813:Procavia capensis
(cape rock hyrax)
Length = 86
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 cctgccctcgaggagctcacagtcta 26
||||||||| ||||||||||||||||
Sbjct: 5 cctgccctcaaggagctcacagtcta 30
>RF00655;mir-28;AAPN01068662.1/5435-5333 9258:Ornithorhynchus
anatinus (platypus)
Length = 103
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 3 tgccctcgaggagctcacagtctag 27
||||| |||||||||||||||||||
Sbjct: 7 tgcccacgaggagctcacagtctag 31
