miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00650;mir-153;BAAE01047906.1/23-109 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 133 bits (67), Expect = 3e-31
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 1 gtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaagtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 gtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaagtg 71
Query: 61 atcattg 67
|||||||
Sbjct: 72 atcattg 78
>RF00650;mir-153;AAWZ01013157.1/56717-56632 28377:Anolis
carolinensis (green anole)
Length = 86
Score = 85.7 bits (43), Expect = 6e-17
Identities = 62/67 (92%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 1 gtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaagtg 60
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 12 gtgtcatttttgtgat-ttgcagctagtaatcctggcccagttgcatagtcacaaaagtg 70
Query: 61 atcattg 67
|||||||
Sbjct: 71 atcattg 77
>RF00650;mir-153;ABQF01010730.1/5361-5446 59729:Taeniopygia
guttata
Length = 86
Score = 73.8 bits (37), Expect = 2e-13
Identities = 56/61 (91%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 3 gtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaagtgat 62
|||||||||||||| |||||||||||||| || |||||||||||||||||||||||||
Sbjct: 14 gtcatttttgtgat-ttgcagctagtaatctggctccagttgcatagtcacaaaagtgat 72
Query: 63 c 63
|
Sbjct: 73 c 73
>RF00650;mir-153;ABRQ01035369.1/2287-2202 9813:Procavia capensis
(cape rock hyrax)
Length = 86
Score = 69.9 bits (35), Expect = 4e-12
Identities = 60/67 (89%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 1 gtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaagtg 60
|||||||||||||||| | |||||||||| | | | |||||||||||||||||||||||
Sbjct: 12 gtgtcatttttgtgatct-gcagctagtattctcactccagttgcatagtcacaaaagtg 70
Query: 61 atcattg 67
|||||||
Sbjct: 71 atcattg 77
>RF00650;mir-153;BAAF04013663.1/2456-2371 8090:Oryzias latipes
(Japanese medaka)
Length = 86
Score = 54.0 bits (27), Expect = 2e-07
Identities = 58/67 (86%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 1 gtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaagtg 60
|||||||||||||| | |||||||||||| | || |||||||||||||||||||| ||
Sbjct: 12 gtgtcatttttgtggt-ttgcagctagtactctggctccagttgcatagtcacaaaaatg 70
Query: 61 atcattg 67
| |||||
Sbjct: 71 agcattg 77
>RF00650;mir-153;BX323042.7/121254-121169 7955:Danio rerio
(zebrafish)
Length = 86
Score = 50.1 bits (25), Expect = 3e-06
Identities = 50/57 (87%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 1 gtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaa 57
|||||||||||||| | |||||||||||| | || ||||||||||||||||||||
Sbjct: 12 gtgtcatttttgtggt-ttgcagctagtagtctggttccagttgcatagtcacaaaa 67
>RF00650;mir-153;AANH01011406.1/2584-2499 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 86
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 38 ccagttgcatagtcacaaaagtgatcat 65
|||||||||||||||||||| |||||||
Sbjct: 48 ccagttgcatagtcacaaaaatgatcat 75
>RF00650;mir-153;AAGJ02018792.1/5926-5834 7668:Strongylocentrotus
purpuratus
Length = 93
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 agttgcatagtcacaaaagtgat 62
|||||||||||||||||||||||
Sbjct: 59 agttgcatagtcacaaaagtgat 81
>RF00650;mir-153;AABS01000027.1/231997-232081 7719:Ciona
intestinalis
Length = 85
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 40 agttgcatagtcacaaaagtgatcat 65
||||||||||| ||||||||||||||
Sbjct: 49 agttgcatagtaacaaaagtgatcat 74
>RF00650;mir-153;ABJB010903342.1/3344-3261 6945:Ixodes scapularis
(black-legged tick)
Length = 84
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 42 ttgcatagtcacaaaagtgat 62
|||||||||||||||||||||
Sbjct: 51 ttgcatagtcacaaaagtgat 71
