miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00650;mir-153;ABRQ01035369.1/2287-2202 9813:Procavia capensis
(cape rock hyrax)
Length = 86
Score = 129 bits (65), Expect = 5e-30
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 1 ccagtgtcatttttgtgatctgcagctagtattctcgctccagttgcatagtcacaaaag 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 9 ccagtgtcatttttgtgatctgcagctagtattctcactccagttgcatagtcacaaaag 68
Query: 61 tgatcattg 69
|||||||||
Sbjct: 69 tgatcattg 77
>RF00650;mir-153;ABQF01010730.1/5361-5446 59729:Taeniopygia
guttata
Length = 86
Score = 95.6 bits (48), Expect = 7e-20
Identities = 57/60 (95%)
Strand = Plus / Plus
Query: 6 gtcatttttgtgatctgcagctagtattctcgctccagttgcatagtcacaaaagtgatc 65
|||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 14 gtcatttttgtgatttgcagctagtaatctggctccagttgcatagtcacaaaagtgatc 73
>RF00650;mir-153;BAAF04013663.1/2456-2371 8090:Oryzias latipes
(Japanese medaka)
Length = 86
Score = 89.7 bits (45), Expect = 4e-18
Identities = 63/69 (91%)
Strand = Plus / Plus
Query: 1 ccagtgtcatttttgtgatctgcagctagtattctcgctccagttgcatagtcacaaaag 60
||||||||||||||||| | ||||||||||| ||| |||||||||||||||||||||||
Sbjct: 9 ccagtgtcatttttgtggtttgcagctagtactctggctccagttgcatagtcacaaaaa 68
Query: 61 tgatcattg 69
||| |||||
Sbjct: 69 tgagcattg 77
>RF00650;mir-153;AAWZ01013157.1/56717-56632 28377:Anolis
carolinensis (green anole)
Length = 86
Score = 87.7 bits (44), Expect = 2e-17
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 2 cagtgtcatttttgtgatctgcagctagtattctcgctccagttgcatagtcacaaaagt 61
|||||||||||||||||| ||||||||||| || | ||||||||||||||||||||||
Sbjct: 10 cagtgtcatttttgtgatttgcagctagtaatcctggcccagttgcatagtcacaaaagt 69
Query: 62 gatcattg 69
||||||||
Sbjct: 70 gatcattg 77
>RF00650;mir-153;BX323042.7/121254-121169 7955:Danio rerio
(zebrafish)
Length = 86
Score = 71.9 bits (36), Expect = 9e-13
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 4 gtgtcatttttgtgatctgcagctagtattctcgctccagttgcatagtcacaaaa 59
|||||||||||||| | ||||||||||| ||| | |||||||||||||||||||||
Sbjct: 12 gtgtcatttttgtggtttgcagctagtagtctggttccagttgcatagtcacaaaa 67
>RF00650;mir-153;AANH01011406.1/2584-2499 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 86
Score = 71.9 bits (36), Expect = 9e-13
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 4 gtgtcatttttgtgatctgcagctagtattctcgctccagttgcatagtcacaaaagtga 63
|||||||| ||||| | |||| |||||| ||| ||||||||||||||||||||||| |||
Sbjct: 12 gtgtcattcttgtggtttgcaactagtagtctggctccagttgcatagtcacaaaaatga 71
Query: 64 tcat 67
||||
Sbjct: 72 tcat 75
>RF00650;mir-153;BAAE01047906.1/23-109 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 67.9 bits (34), Expect = 1e-11
Identities = 62/70 (88%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 1 ccagtgtcatttttgtgatct-gcagctagtattctcgctccagttgcatagtcacaaaa 59
||||||||||||||||||| | |||||||||| | | ||||||||||||||||||||
Sbjct: 9 ccagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaa 68
Query: 60 gtgatcattg 69
||||||||||
Sbjct: 69 gtgatcattg 78
>RF00650;mir-153;AAGJ02018792.1/5926-5834 7668:Strongylocentrotus
purpuratus
Length = 93
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 42 agttgcatagtcacaaaagtgat 64
|||||||||||||||||||||||
Sbjct: 59 agttgcatagtcacaaaagtgat 81
>RF00650;mir-153;AABS01000027.1/231997-232081 7719:Ciona
intestinalis
Length = 85
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 42 agttgcatagtcacaaaagtgatcat 67
||||||||||| ||||||||||||||
Sbjct: 49 agttgcatagtaacaaaagtgatcat 74
>RF00650;mir-153;ABJB010903342.1/3344-3261 6945:Ixodes scapularis
(black-legged tick)
Length = 84
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 44 ttgcatagtcacaaaagtgat 64
|||||||||||||||||||||
Sbjct: 51 ttgcatagtcacaaaagtgat 71
