miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;ABRQ01054377.1/1437-1516 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 119 bits (60), Expect = 4e-27
Identities = 63/64 (98%)
Strand = Plus / Plus
Query: 1 agataggttatccgtgttgccttcgctttatctgtgacgaatcatacacggttcacctat 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 10 agataggttatccgtgttgccttcgctttatttgtgacgaatcatacacggttcacctat 69
Query: 61 tttt 64
||||
Sbjct: 70 tttt 73
>RF00641;mir-154;ACBE01216515.1/5359-5280 9685:Felis catus
(domestic cat)
Length = 80
Score = 71.9 bits (36), Expect = 9e-13
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 4 taggttatccgtgttgccttcgctttatctgtgacgaatcatacacggttcacctatttt 63
||||||||||||||||||||| || || ||||||| ||||||||| |||||||||||||
Sbjct: 13 taggttatccgtgttgccttcactcgatttgtgacgcatcatacaccgttcacctatttt 72
>RF00641;mir-154;ABRT010163757.1/310-389 9478:Tarsius syrichta
(Philippine tarsier)
Length = 80
Score = 65.9 bits (33), Expect = 5e-11
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 1 agataggttatccgtgttgccttcgctttatctgtgacgaatcatacac 49
|||||||||||||||||||||||| || || |||||||||||||||||
Sbjct: 10 agataggttatccgtgttgccttcaattgatttgtgacgaatcatacac 58
>RF00641;mir-154;AAPE01468961.1/2426-2505 59463:Myotis lucifugus
(little brown bat)
Length = 80
Score = 46.1 bits (23), Expect = 5e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 agataggttatccgtgttgccttcgctttat 31
|||| ||||||||||||||||||| ||||||
Sbjct: 10 agatgggttatccgtgttgccttcactttat 40
