miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00674;mir-187;AAEX02026401.1/29363-29466 9615:Canis lupus
familiaris (dog)
Length = 104
Score = 121 bits (61), Expect = 1e-27
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 1 tcgggctacaacacgggacccgggcgctgctccgacccctcgtgtcttgtgttgcagccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27 tcgggctacaacacgggacccgggcgctgctccgacccctcgtgtcttgtgttgcagccg 86
Query: 61 g 61
|
Sbjct: 87 g 87
>RF00674;mir-187;ABRT010481208.1/1422-1525 9478:Tarsius syrichta
(Philippine tarsier)
Length = 104
Score = 99.6 bits (50), Expect = 4e-21
Identities = 56/58 (96%)
Strand = Plus / Plus
Query: 4 ggctacaacacgggacccgggcgctgctccgacccctcgtgtcttgtgttgcagccgg 61
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 30 ggctacaacacaggacccgggcgctgctctgacccctcgtgtcttgtgttgcagccgg 87
>RF00674;mir-187;CAAA01044840.1/745-848 10090:Mus musculus (house
mouse)
Length = 104
Score = 99.6 bits (50), Expect = 4e-21
Identities = 56/58 (96%)
Strand = Plus / Plus
Query: 4 ggctacaacacgggacccgggcgctgctccgacccctcgtgtcttgtgttgcagccgg 61
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 30 ggctacaacacaggacccgggcgctgctctgacccctcgtgtcttgtgttgcagccgg 87
>RF00674;mir-187;AAYZ01085202.1/4617-4513 9978:Ochotona princeps
(American pika)
Length = 105
Score = 97.6 bits (49), Expect = 1e-20
Identities = 58/61 (95%)
Strand = Plus / Plus
Query: 1 tcgggctacaacacgggacccgggcgctgctccgacccctcgtgtcttgtgttgcagccg 60
|||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 28 tcgggctacaacccaggacccgggcgctgctctgacccctcgtgtcttgtgttgcagccg 87
Query: 61 g 61
|
Sbjct: 88 g 88
>RF00674;mir-187;AAGU02088398.1/1497-1394 9785:Loxodonta africana
(African savanna elephant)
Length = 104
Score = 97.6 bits (49), Expect = 1e-20
Identities = 58/61 (95%)
Strand = Plus / Plus
Query: 1 tcgggctacaacacgggacccgggcgctgctccgacccctcgtgtcttgtgttgcagccg 60
|||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 27 tcgggctacaacacaggacccgggtgctgctctgacccctcgtgtcttgtgttgcagccg 86
Query: 61 g 61
|
Sbjct: 87 g 87
>RF00674;mir-187;AAKN02020391.1/22749-22852 10141:Cavia porcellus
(domestic guinea pig)
Length = 104
Score = 85.7 bits (43), Expect = 5e-17
Identities = 55/59 (93%)
Strand = Plus / Plus
Query: 3 gggctacaacacgggacccgggcgctgctccgacccctcgtgtcttgtgttgcagccgg 61
|||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 29 gggctacaacacaggacccgggcgctgatttgacccctcgtgtcttgtgttgcagccgg 87
>RF00674;mir-187;AADN02008126.1/227633-227736 9031:Gallus gallus
(chicken)
Length = 104
Score = 48.1 bits (24), Expect = 1e-05
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 4 ggctacaacacgggacccgggcgctgctccgacccctcgtgtcttgtgttgcagcc 59
||||||||||| |||| ||| ||| || || |||||||||||||||||||||||
Sbjct: 30 ggctacaacacaggacatgggagcttttctgaaccctcgtgtcttgtgttgcagcc 85
>RF00674;mir-187;AAPN01052341.1/8485-8382 9258:Ornithorhynchus
anatinus (platypus)
Length = 104
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 37 ccctcgtgtcttgtgttgcagcc 59
|||||||||||||||||||||||
Sbjct: 63 ccctcgtgtcttgtgttgcagcc 85
>RF00674;mir-187;AAWZ01027996.1/55264-55367 28377:Anolis
carolinensis (green anole)
Length = 104
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 37 ccctcgtgtcttgtgttgcagcc 59
|||||||||||||||||||||||
Sbjct: 63 ccctcgtgtcttgtgttgcagcc 85
>RF00674;mir-187;BX927241.19/109900-110007 7955:Danio rerio
(zebrafish)
Length = 108
Score = 42.1 bits (21), Expect = 7e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 39 ctcgtgtcttgtgttgcagcc 59
|||||||||||||||||||||
Sbjct: 69 ctcgtgtcttgtgttgcagcc 89
>RF00674;mir-187;CAAB01000566.1/61799-61691 31033:Takifugu
rubripes
Length = 109
Score = 42.1 bits (21), Expect = 7e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 39 ctcgtgtcttgtgttgcagcc 59
|||||||||||||||||||||
Sbjct: 70 ctcgtgtcttgtgttgcagcc 90
>RF00674;mir-187;BAAF04062858.1/307-199 8090:Oryzias latipes
(Japanese medaka)
Length = 109
Score = 42.1 bits (21), Expect = 7e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 39 ctcgtgtcttgtgttgcagcc 59
|||||||||||||||||||||
Sbjct: 70 ctcgtgtcttgtgttgcagcc 90
