miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00672;mir-190;AANN01313225.1/1014-1098 9365:Erinaceus europaeus
(western European hedgehog)
Length = 85
Score = 125 bits (63), Expect = 7e-29
Identities = 66/67 (98%)
Strand = Plus / Plus
Query: 1 ctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatcaaacatatt 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 10 ctgtgtgatatgtttgatatattaggttgttatttgatccaactatatatcaaacatatt 69
Query: 61 cctacag 67
|||||||
Sbjct: 70 cctacag 76
>RF00672;mir-190;AAVX01574962.1/139-55 7868:Callorhinchus milii
(ghost shark)
Length = 85
Score = 111 bits (56), Expect = 1e-24
Identities = 62/64 (96%)
Strand = Plus / Plus
Query: 1 ctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatcaaacatatt 60
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 10 ctgtgtgatatgtttgatatattaggttgttattaaagccaactatatatcaaacatatt 69
Query: 61 ccta 64
||||
Sbjct: 70 ccta 73
>RF00672;mir-190;BAAE01125523.1/2749-2664 8090:Oryzias latipes
(Japanese medaka)
Length = 86
Score = 87.7 bits (44), Expect = 2e-17
Identities = 63/68 (92%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 1 ctgtgtgatatgtttgatatattaggttgttatttaatcc-aactatatatcaaacatat 59
|||| ||||||||||||||||||||||||| ||| | ||| |||||||||||||||||||
Sbjct: 10 ctgtctgatatgtttgatatattaggttgtaattcagtcccaactatatatcaaacatat 69
Query: 60 tcctacag 67
||||||||
Sbjct: 70 tcctacag 77
>RF00672;mir-190;AAVX01028763.1/1639-1724 7868:Callorhinchus milii
(ghost shark)
Length = 86
Score = 50.1 bits (25), Expect = 3e-06
Identities = 53/61 (86%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 1 ctgtgtgatatgtttgatatattaggttgttatttaatc-caactatatatcaaacatat 59
|||| ||||||||||| ||| ||||||||||| | || | |||| |||||||||||||||
Sbjct: 10 ctgtctgatatgtttgctatgttaggttgttactcaaactcaacgatatatcaaacatat 69
Query: 60 t 60
|
Sbjct: 70 t 70
>RF00672;mir-190;AAPN01024655.1/497-583 9258:Ornithorhynchus
anatinus (platypus)
Length = 87
Score = 42.1 bits (21), Expect = 8e-04
Identities = 30/32 (93%), Gaps = 2/32 (6%)
Strand = Plus / Plus
Query: 1 ctgtgtgatatgtttgatatattaggttgtta 32
|||||||||||||||| ||||||||||||||
Sbjct: 10 ctgtgtgatatgtttg--atattaggttgtta 39
>RF00672;mir-190;ABQF01057687.1/1255-1341 59729:Taeniopygia
guttata
Length = 87
Score = 42.1 bits (21), Expect = 8e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 39 ccaactatatatcaaacatattcctacag 67
||||||| ||||||||||||||| |||||
Sbjct: 50 ccaactaaatatcaaacatattcttacag 78
