miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00257;mir-194;ABRQ01130986.1/8094-8179 9813:Procavia capensis
(cape rock hyrax)
Length = 86
Score = 149 bits (75), Expect = 7e-36
Identities = 81/83 (97%)
Strand = Plus / Plus
Query: 1 gggctcccaccccctgtaacagcaactccatgtggaagtgcccactggttccagtggggc 60
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2 gggctcccaccccttgtaacagcaactccatgtggaagtgctcactggttccagtggggc 61
Query: 61 tgctgttatctggggcgggggcc 83
|||||||||||||||||||||||
Sbjct: 62 tgctgttatctggggcgggggcc 84
>RF00257;mir-194;AC127556.4/107031-107116 10090:Mus musculus
(house mouse)
Length = 86
Score = 139 bits (70), Expect = 6e-33
Identities = 73/74 (98%)
Strand = Plus / Plus
Query: 2 ggctcccaccccctgtaacagcaactccatgtggaagtgcccactggttccagtggggct 61
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 ggctcccaccctctgtaacagcaactccatgtggaagtgcccactggttccagtggggct 62
Query: 62 gctgttatctgggg 75
||||||||||||||
Sbjct: 63 gctgttatctgggg 76
>RF00257;mir-194;AAGV020435009.1/201-286 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 86
Score = 135 bits (68), Expect = 1e-31
Identities = 74/76 (97%)
Strand = Plus / Plus
Query: 10 ccccctgtaacagcaactccatgtggaagtgcccactggttccagtggggctgctgttat 69
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 11 ccccctgtaacagcaactccatgtggaagtgcccgctggttccagtggggctgctgttat 70
Query: 70 ctggggcgggggccag 85
| ||||||||||||||
Sbjct: 71 ccggggcgggggccag 86
>RF00257;mir-194;ABRN01259841.1/10643-10728 9739:Tursiops
truncatus (bottlenosed dolphin)
Length = 86
Score = 129 bits (65), Expect = 6e-30
Identities = 77/81 (95%)
Strand = Plus / Plus
Query: 5 tcccaccccctgtaacagcaactccatgtggaagtgcccactggttccagtggggctgct 64
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 6 tcccaccccctgtaacagcaactccatgtggaagtgcccacaagttccagtggggctgct 65
Query: 65 gttatctggggcgggggccag 85
||||||||||| | |||||||
Sbjct: 66 gttatctggggtgcgggccag 86
>RF00257;mir-194;AAFC03033465.1/1804-1720 9913:Bos taurus (cattle)
Length = 85
Score = 117 bits (59), Expect = 2e-26
Identities = 78/83 (93%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 2 ggctcccaccccctgtaacagcaactccatgtggaagtgcccactggttccagtggggct 61
|||||||||||||||||||||||||||||||||||||| || || ||||||||||||||
Sbjct: 3 ggctcccaccccctgtaacagcaactccatgtggaagt-acctctagttccagtggggct 61
Query: 62 gctgttatctggggcgggggcca 84
|||||||||||||| ||||||||
Sbjct: 62 gctgttatctggggtgggggcca 84
>RF00257;mir-194;AACZ02125304.1/2951-2872 9598:Pan troglodytes
(chimpanzee)
Length = 80
Score = 117 bits (59), Expect = 2e-26
Identities = 69/71 (97%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 13 cctgtaacagcaactccatgtggaagtgcccactggttccagtggggctgctgttatctg 72
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 cctgtaacagcaactc-atgtggaagtgcccactggttccagtggggctgctgttatctg 67
Query: 73 gggcgggggcc 83
||||| |||||
Sbjct: 68 gggcgagggcc 78
>RF00257;mir-194;AACN010376920.1/992-1078 9615:Canis lupus
familiaris (dog)
Length = 87
Score = 109 bits (55), Expect = 6e-24
Identities = 62/63 (98%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 9 accccctgtaacagcaactccatgt-ggaagtgcccactggttccagtggggctgctgtt 67
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 10 accccctgtaacagcaactccatgttggaagtgcccactggttccagtggggctgctgtt 69
Query: 68 atc 70
|||
Sbjct: 70 atc 72
>RF00257;mir-194;ABRO01037016.1/11275-11359 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 85
Score = 105 bits (53), Expect = 9e-23
Identities = 66/69 (95%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 10 ccccctgtaacagcaactccatgtggaagtgcccactggttccagtggggctgctgttat 69
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 11 ccccctgtaacagcaactccatgtggaagtg-ccactgtttccagtggggctgctgttat 69
Query: 70 ctggggcgg 78
| |||||||
Sbjct: 70 ccggggcgg 78
>RF00257;mir-194;AAYZ01125558.1/495-410 9978:Ochotona princeps
(American pika)
Length = 86
Score = 91.7 bits (46), Expect = 1e-18
Identities = 69/74 (93%), Gaps = 2/74 (2%)
Strand = Plus / Plus
Query: 3 gctcccaccccctgtaacagcaactccatgtggaagtgccca-ctggttccagtggggct 61
||||||||||||||||||||||||||||||||||| ||| || || |||||||||||||
Sbjct: 4 gctcccaccccctgtaacagcaactccatgtggaa-tgctcagctctttccagtggggct 62
Query: 62 gctgttatctgggg 75
||||||||||||||
Sbjct: 63 gctgttatctgggg 76
>RF00257;mir-194;AAPN01023116.1/334-252 9258:Ornithorhynchus
anatinus (platypus)
Length = 83
Score = 83.8 bits (42), Expect = 3e-16
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 6 cccaccccctgtaacagcaactccatgtggaagtgcccactggttccagtggggctgctg 65
|||||||| |||||||||||||||||||||||| | | ||||||||||||| |||||||
Sbjct: 6 cccaccccttgtaacagcaactccatgtggaagggtctcctggttccagtggagctgctg 65
Query: 66 ttatct 71
||||||
Sbjct: 66 ttatct 71
>RF00257;mir-194;AAIY01704218.1/1027-942 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 86
Score = 83.8 bits (42), Expect = 3e-16
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 11 cccctgtaacagcaactccatgtggaagtgcccactggttccagtggggctgctgttatc 70
|||||||||||||||||||||||||| |||| | ||||||||||||| | ||||||| |
Sbjct: 12 cccctgtaacagcaactccatgtggaggtgctcgctggttccagtggagttgctgttgcc 71
Query: 71 tggggcgggggcca 84
||||||| ||||||
Sbjct: 72 tggggcgagggcca 85
>RF00257;mir-194;ABQO010307678.1/134-48 9315:Macropus eugenii
(tammar wallaby)
Length = 87
Score = 50.1 bits (25), Expect = 5e-06
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 12 ccctgtaacagcaactccatgtggaagtgcccactggttccagtggggctgctgtta 68
|||||||||||||||||||||||| | || ||| ||||||||||| ||||||||
Sbjct: 13 ccctgtaacagcaactccatgtgggacagcttcctgcttccagtgggggtgctgtta 69
>RF00257;mir-194;CAAE01015008.1/695772-695680 99883:Tetraodon
nigroviridis
Length = 93
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 47 ggttccagtggggctgctgttatct 71
|||||||||||||||||||||||||
Sbjct: 55 ggttccagtggggctgctgttatct 79
>RF00257;mir-194;BX248510.4/109392-109307 7955:Danio rerio
(zebrafish)
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtggaag 38
||||||||||||||||||||||||
Sbjct: 16 tgtaacagcaactccatgtggaag 39
>RF00257;mir-194;CAAB01000046.1/113108-113195 31033:Takifugu
rubripes
Length = 88
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtggaag 38
||||||||||||||||||||||||
Sbjct: 16 tgtaacagcaactccatgtggaag 39
>RF00257;mir-194;AANH01000564.1/249696-249610 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtggaag 38
||||||||||||||||||||||||
Sbjct: 16 tgtaacagcaactccatgtggaag 39
>RF00257;mir-194;BAAE01291848.1/854-770 8090:Oryzias latipes
(Japanese medaka)
Length = 85
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtggaag 38
||||||||||||||||||||||||
Sbjct: 16 tgtaacagcaactccatgtggaag 39
>RF00257;mir-194;AAWZ01016377.1/110498-110415 28377:Anolis
carolinensis (green anole)
Length = 84
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtggaa 37
|||||||||||||||||||||||
Sbjct: 16 tgtaacagcaactccatgtggaa 38
>RF00257;mir-194;AAPN01089469.1/14273-14191 9258:Ornithorhynchus
anatinus (platypus)
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>RF00257;mir-194;AALT01482191.1/6150-6232 42254:Sorex araneus
(European shrew)
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>RF00257;mir-194;AANN01206173.1/2762-2845 9365:Erinaceus europaeus
(western European hedgehog)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>RF00257;mir-194;AAFC03085979.1/1394-1478 9913:Bos taurus (cattle)
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>RF00257;mir-194;AY866323.1/164-248 9545:Macaca nemestrina
(pig-tailed macaque)
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>RF00257;mir-194;CAAA01010876.1/4210-4293 10090:Mus musculus
(house mouse)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>RF00257;mir-194;ABRO01051746.1/2439-2355 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>RF00257;mir-194;AAIY01186786.1/2214-2298 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 16 tgtaacagcaactccatgtgga 37
>RF00257;mir-194;AAGU02014260.1/2999-2915 9785:Loxodonta africana
(African savanna elephant)
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>RF00257;mir-194;AADN02012132.1/23965-23883 9031:Gallus gallus
(chicken)
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
