miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00254;mir-16;AAKN02044430.1/75518-75594 10141:Cavia porcellus
(domestic guinea pig)
Length = 77
Score = 121 bits (61), Expect = 2e-27
Identities = 73/77 (94%)
Strand = Plus / Plus
Query: 12 ccctggctctagcagcacagaaatattggcactgggaagagagtctgccaatattggctg 71
|||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct: 1 ccctggctttagcagcacagaaatattggcactgggaagcaagtctgccaatattggttg 60
Query: 72 tgctgctccaggcaggg 88
|||||||||||||||||
Sbjct: 61 tgctgctccaggcaggg 77
>RF00254;mir-16;ABRO01159172.1/3627-3550 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 78
Score = 115 bits (58), Expect = 1e-25
Identities = 74/78 (94%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 12 ccctggctctagcagcacagaaatattggcact-gggaagagagtctgccaatattggct 70
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 1 ccctggctctagcagcacagaaatattggcactggggaaacaagtctgccaatattggct 60
Query: 71 gtgctgctccaggcaggg 88
||||||||||||||||||
Sbjct: 61 gtgctgctccaggcaggg 78
>RF00254;mir-16;AAGU02565633.1/508-432 9785:Loxodonta africana
(African savanna elephant)
Length = 77
Score = 113 bits (57), Expect = 4e-25
Identities = 72/77 (93%)
Strand = Plus / Plus
Query: 12 ccctggctctagcagcacagaaatattggcactgggaagagagtctgccaatattggctg 71
|||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||
Sbjct: 1 ccctggctctagcagcacagaaatattggcaccgggagaagagtctaccaatattggctg 60
Query: 72 tgctgctccaggcaggg 88
||||||| |||||||||
Sbjct: 61 tgctgctgcaggcaggg 77
>RF00254;mir-16;AAPE01106267.1/132-58 59463:Myotis lucifugus
(little brown bat)
Length = 75
Score = 103 bits (52), Expect = 4e-22
Identities = 67/71 (94%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 12 ccctggctctagcagcacagaaatattggcactgggaagagagtctgccaatattggctg 71
||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 1 ccctggctctagcagcacagaaatattggcactggga--agagtctgccaatatgggctg 58
Query: 72 tgctgctccag 82
||||||||||
Sbjct: 59 agctgctccag 69
>RF00254;mir-16;AALT01598296.1/524-600 42254:Sorex araneus
(European shrew)
Length = 77
Score = 85.7 bits (43), Expect = 9e-17
Identities = 69/75 (92%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 15 tggctctagcagcacagaaatatt-ggcactgggaagagagtctgccaatattggctgtg 73
|||||||||||||||||||||||| ||||||||| | ||| |||||||||||| |||||
Sbjct: 4 tggctctagcagcacagaaatattgggcactgggga-agaatctgccaatattaactgtg 62
Query: 74 ctgctccaggcaggg 88
|||||||||||||||
Sbjct: 63 ctgctccaggcaggg 77
>RF00254;mir-16;AAFR03049810.1/89427-89350 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 78
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 12 ccctggctctagcagcacagaaatattggcac 43
|||||||| |||||||||| ||||||||||||
Sbjct: 1 ccctggctttagcagcacaaaaatattggcac 32
