miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00144;mir-199;ABRQ01043924.1/1531-1628 9813:Procavia capensis
(cape rock hyrax)
Length = 98
Score = 137 bits (69), Expect = 2e-32
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 1 gtctacccagtgtttagactatctgttcaggactcccaaattgtacagtagtctgcacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15 gtctacccagtgtttagactatctgttcaggactcccaaattgtacagtagtctgcacat 74
Query: 61 tggttaggc 69
|||||||||
Sbjct: 75 tggttaggc 83
>RF00144;mir-199;AAHX01020762.1/285-187 10116:Rattus norvegicus
(Norway rat)
Length = 99
Score = 129 bits (65), Expect = 5e-30
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 1 gtctacccagtgtttagactatctgttcaggactcccaaattgtacagtagtctgcacat 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 15 gtctacccagtgtttagactacctgttcaggactcccaaattgtacagtagtctgcacat 74
Query: 61 tggttaggc 69
|||||||||
Sbjct: 75 tggttaggc 83
>RF00144;mir-199;AADN02026635.1/12137-12039 9031:Gallus gallus
(chicken)
Length = 99
Score = 89.7 bits (45), Expect = 4e-18
Identities = 63/69 (91%)
Strand = Plus / Plus
Query: 1 gtctacccagtgtttagactatctgttcaggactcccaaattgtacagtagtctgcacat 60
|||| ||||||||| |||||| |||||||||||| | | |||||||||||||||||||||
Sbjct: 15 gtctgcccagtgttcagactacctgttcaggactacgagattgtacagtagtctgcacat 74
Query: 61 tggttaggc 69
|||||||||
Sbjct: 75 tggttaggc 83
>RF00144;mir-199;AANU01122656.1/5080-5181 9544:Macaca mulatta
(rhesus monkey)
Length = 102
Score = 71.9 bits (36), Expect = 9e-13
Identities = 60/67 (89%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 5 acccagtgtttagactatctgttcagga--ctcccaaattgtacagtagtctgcacattg 62
|||||||||| |||||| |||||||||| ||| ||| |||||||||||||||||||||
Sbjct: 20 acccagtgttcagactacctgttcaggaggctctcaacgtgtacagtagtctgcacattg 79
Query: 63 gttaggc 69
|||||||
Sbjct: 80 gttaggc 86
>RF00144;mir-199;CAAK05055714.1/3303-3204 7955:Danio rerio
(zebrafish)
Length = 100
Score = 63.9 bits (32), Expect = 2e-10
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 6 cccagtgtttagactatctgttcaggactcccaaattgtacagtagtctgcacattggtt 65
||||||||| |||||| ||||||||| | | ||||||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcagggcgtagagattgtacagtagtctgcacattggtt 80
Query: 66 aggc 69
||||
Sbjct: 81 aggc 84
>RF00144;mir-199;AAWR02017790.1/21207-21308 9796:Equus caballus
(horse)
Length = 102
Score = 61.9 bits (31), Expect = 9e-10
Identities = 58/66 (87%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 6 cccagtgtttagactatctgttcagga--ctcccaaattgtacagtagtctgcacattgg 63
||||||||| |||||| ||||||||| |||| || ||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcagggggctccgaatgtgtacagtagtctgcacattgg 80
Query: 64 ttaggc 69
||||||
Sbjct: 81 ttaggc 86
>RF00144;mir-199;ABRQ01040059.1/381-480 9813:Procavia capensis
(cape rock hyrax)
Length = 100
Score = 60.0 bits (30), Expect = 4e-09
Identities = 58/66 (87%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 5 acccagtgtttagactatctgttcaggactcccaaat-tgtacagtagtctgcacattgg 63
|||||||||| |||||| ||||||||| | | ||| ||||||||||||||||||||||
Sbjct: 20 acccagtgttcagactacctgttcaggggttctgaatgtgtacagtagtctgcacattgg 79
Query: 64 ttaggc 69
||||||
Sbjct: 80 ttaggc 85
>RF00144;mir-199;AAWZ01010560.1/117412-117513 28377:Anolis
carolinensis (green anole)
Length = 102
Score = 58.0 bits (29), Expect = 1e-08
Identities = 56/64 (87%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 6 cccagtgtttagactatctgttcagga--ctcccaaattgtacagtagtctgcacattgg 63
||||||||| |||||| |||||||||| || | || ||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcaggaagctacaaaggtgtacagtagtctgcacattgg 80
Query: 64 ttag 67
||||
Sbjct: 81 ttag 84
>RF00144;mir-199;CU138550.14/80968-81064 7955:Danio rerio
(zebrafish)
Length = 97
Score = 58.0 bits (29), Expect = 1e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 41 ttgtacagtagtctgcacattggttaggc 69
|||||||||||||||||||||||||||||
Sbjct: 55 ttgtacagtagtctgcacattggttaggc 83
>RF00144;mir-199;ABPJ01035359.1/311-410 35575:Mchenga conophoros
Length = 100
Score = 58.0 bits (29), Expect = 1e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 41 ttgtacagtagtctgcacattggttaggc 69
|||||||||||||||||||||||||||||
Sbjct: 56 ttgtacagtagtctgcacattggttaggc 84
>RF00144;mir-199;AANH01004681.1/136443-136347 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 97
Score = 58.0 bits (29), Expect = 1e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 41 ttgtacagtagtctgcacattggttaggc 69
|||||||||||||||||||||||||||||
Sbjct: 55 ttgtacagtagtctgcacattggttaggc 83
>RF00144;mir-199;BAAE01013242.1/84-183 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 58.0 bits (29), Expect = 1e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 41 ttgtacagtagtctgcacattggttaggc 69
|||||||||||||||||||||||||||||
Sbjct: 56 ttgtacagtagtctgcacattggttaggc 84
>RF00144;mir-199;AAFR03049221.1/24866-24967 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 102
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 42 tgtacagtagtctgcacattggttaggc 69
||||||||||||||||||||||||||||
Sbjct: 59 tgtacagtagtctgcacattggttaggc 86
>RF00144;mir-199;AAQQ01144563.1/4013-4113 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 101
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 42 tgtacagtagtctgcacattggttaggc 69
||||||||||||||||||||||||||||
Sbjct: 58 tgtacagtagtctgcacattggttaggc 85
>RF00144;mir-199;AAHY01076446.1/77391-77291 10090:Mus musculus
(house mouse)
Length = 101
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 42 tgtacagtagtctgcacattggttaggc 69
||||||||||||||||||||||||||||
Sbjct: 58 tgtacagtagtctgcacattggttaggc 85
>RF00144;mir-199;AAKN02056464.1/56518-56417 10141:Cavia porcellus
(domestic guinea pig)
Length = 102
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 42 tgtacagtagtctgcacattggttaggc 69
||||||||||||||||||||||||||||
Sbjct: 59 tgtacagtagtctgcacattggttaggc 86
>RF00144;mir-199;ABDC01156515.1/926-825 30608:Microcebus murinus
(gray mouse lemur)
Length = 102
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 43 gtacagtagtctgcacattggttaggc 69
|||||||||||||||||||||||||||
Sbjct: 60 gtacagtagtctgcacattggttaggc 86
>RF00144;mir-199;ABQF01040854.1/79152-79251 59729:Taeniopygia
guttata
Length = 100
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 41 ttgtacagtagtctgcacattggttag 67
|||||||||||||||||||||||||||
Sbjct: 56 ttgtacagtagtctgcacattggttag 82
>RF00144;mir-199;AAVX01256932.1/291-390 7868:Callorhinchus milii
(ghost shark)
Length = 100
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 41 ttgtacagtagtctgcacattggttag 67
|||||||||||||||||||||||||||
Sbjct: 56 ttgtacagtagtctgcacattggttag 82
>RF00144;mir-199;CT563248.9/85109-85010 7955:Danio rerio
(zebrafish)
Length = 100
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 42 tgtacagtagtctgcacattggttag 67
||||||||||||||||||||||||||
Sbjct: 57 tgtacagtagtctgcacattggttag 82
>RF00144;mir-199;CAAB01000803.1/18144-18243 31033:Takifugu
rubripes
Length = 100
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 42 tgtacagtagtctgcacattggttag 67
||||||||||||||||||||||||||
Sbjct: 57 tgtacagtagtctgcacattggttag 82
>RF00144;mir-199;CAAB01001079.1/26340-26439 31033:Takifugu
rubripes
Length = 100
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 42 tgtacagtagtctgcacattggttag 67
||||||||||||||||||||||||||
Sbjct: 57 tgtacagtagtctgcacattggttag 82
>RF00144;mir-199;AANH01005434.1/24491-24590 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 100
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 42 tgtacagtagtctgcacattggttag 67
||||||||||||||||||||||||||
Sbjct: 57 tgtacagtagtctgcacattggttag 82
>RF00144;mir-199;BAAF04061048.1/5562-5661 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 42 tgtacagtagtctgcacattggttag 67
||||||||||||||||||||||||||
Sbjct: 57 tgtacagtagtctgcacattggttag 82
>RF00144;mir-199;BAAF04076833.1/4729-4828 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 42 tgtacagtagtctgcacattggttag 67
||||||||||||||||||||||||||
Sbjct: 57 tgtacagtagtctgcacattggttag 82
>RF00144;mir-199;ABPJ01052317.1/532-631 35575:Mchenga conophoros
Length = 100
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 45 acagtagtctgcacattggttaggc 69
|||||||||||||||||||||||||
Sbjct: 60 acagtagtctgcacattggttaggc 84
>RF00144;mir-199;AANH01004317.1/876-975 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 100
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 45 acagtagtctgcacattggttaggc 69
|||||||||||||||||||||||||
Sbjct: 60 acagtagtctgcacattggttaggc 84
>RF00144;mir-199;BAAE01184372.1/319-221 8090:Oryzias latipes
(Japanese medaka)
Length = 99
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 45 acagtagtctgcacattggttaggc 69
|||||||||||||||||||||||||
Sbjct: 60 acagtagtctgcacattggttaggc 84
>RF00144;mir-199;AAHX01053598.1/14659-14563 10116:Rattus
norvegicus (Norway rat)
Length = 97
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 42 tgtacagtagtctgcacattggttaggc 69
|||||||||||| |||||||||||||||
Sbjct: 54 tgtacagtagtcagcacattggttaggc 81
>RF00144;mir-199;ABRO01249229.1/2824-2923 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 100
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 42 tgtacagtagtctgcacattggttaggc 69
|||||||||||||||||| |||||||||
Sbjct: 58 tgtacagtagtctgcacactggttaggc 85
>RF00144;mir-199;CAAB01000177.1/183726-183824 31033:Takifugu
rubripes
Length = 99
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 45 acagtagtctgcacattggtta 66
||||||||||||||||||||||
Sbjct: 60 acagtagtctgcacattggtta 81
>RF00144;mir-199;BX088529.6/78678-78580 7955:Danio rerio
(zebrafish)
Length = 99
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 45 acagtagtctgcacattggttaggc 69
||||||||| |||||||||||||||
Sbjct: 59 acagtagtccgcacattggttaggc 83
