miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00241;mir-8;AAPY01315282.1/3050-2977 37347:Tupaia belangeri
(northern tree shrew)
Length = 74
Score = 107 bits (54), Expect = 2e-23
Identities = 61/62 (98%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 9 catcttactgggcagcattggatg-tgtctggtctctaatactgcctggtaatgatgacg 67
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 10 catcttactgggcagcattggatggtgtctggtctctaatactgcctggtaatgatgacg 69
Query: 68 gc 69
||
Sbjct: 70 gc 71
>RF00241;mir-8;AAYZ01293785.1/5589-5517 9978:Ochotona princeps
(American pika)
Length = 73
Score = 105 bits (53), Expect = 7e-23
Identities = 59/61 (96%)
Strand = Plus / Plus
Query: 9 catcttactgggcagcattggatgtgtctggtctctaatactgcctggtaatgatgacgg 68
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 10 catcttactgggcagcattggatgtatctgatctctaatactgcctggtaatgatgacgg 69
Query: 69 c 69
|
Sbjct: 70 c 70
>RF00241;mir-8;AAGW01121226.1/669-596 9986:Oryctolagus cuniculus
(rabbit)
Length = 74
Score = 99.6 bits (50), Expect = 4e-21
Identities = 66/70 (94%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 1 gccgtcgccatcttactgggcagcattggatg-tgtctggtctctaatactgcctggtaa 59
||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 2 gccgtggccatcttactgggcagcattggatggtgactggtctctaatactgcctggtaa 61
Query: 60 tgatgacggc 69
||||| ||||
Sbjct: 62 tgatggcggc 71
>RF00241;mir-8;ABRQ01306924.1/2734-2660 9813:Procavia capensis
(cape rock hyrax)
Length = 75
Score = 99.6 bits (50), Expect = 4e-21
Identities = 63/66 (95%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 5 tcgccatcttactgggcagcattggatg-tgtctggtctctaatactgcctggtaatgat 63
|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct: 6 tcgccatcttactgggcagcattggatggtgtctgtgctctaatactgcctggtaatgat 65
Query: 64 gacggc 69
||||||
Sbjct: 66 gacggc 71
>RF00241;mir-8;AAPN01278105.1/215-140 9258:Ornithorhynchus
anatinus (platypus)
Length = 76
Score = 71.9 bits (36), Expect = 9e-13
Identities = 56/60 (93%), Gaps = 2/60 (3%)
Strand = Plus / Plus
Query: 8 ccatcttactgggcagcattggatgtg-tctg-gtctctaatactgcctggtaatgatga 65
||||||||||||||||||||||||| | |||| || ||||||||||||||||||||||||
Sbjct: 9 ccatcttactgggcagcattggatgagttctgtgtttctaatactgcctggtaatgatga 68
>RF00241;mir-8;AAPE01343286.1/476-400 59463:Myotis lucifugus
(little brown bat)
Length = 77
Score = 69.9 bits (35), Expect = 4e-12
Identities = 59/63 (93%), Gaps = 3/63 (4%)
Strand = Plus / Plus
Query: 7 gccatcttactgggcagcatt-ggatg-tgtctggtctc-taatactgcctggtaatgat 63
||||||||||||||||||||| ||||| |||| |||||| ||||||||||||||||||||
Sbjct: 8 gccatcttactgggcagcatttggatggtgtcaggtctcctaatactgcctggtaatgat 67
Query: 64 gac 66
|||
Sbjct: 68 gac 70
>RF00241;mir-8;AADN02040853.1/30123-30198 9031:Gallus gallus
(chicken)
Length = 76
Score = 63.9 bits (32), Expect = 2e-10
Identities = 55/60 (91%), Gaps = 2/60 (3%)
Strand = Plus / Plus
Query: 8 ccatcttactgggcagcattggatg-tgtctg-gtctctaatactgcctggtaatgatga 65
||||||||||||||||||||||||| | |||| | ||||||||||||||||||||||||
Sbjct: 9 ccatcttactgggcagcattggatgttctctgtttttctaatactgcctggtaatgatga 68
>RF00241;mir-8;AAVX01012727.1/1238-1163 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 61.9 bits (31), Expect = 9e-10
Identities = 54/59 (91%), Gaps = 2/59 (3%)
Strand = Plus / Plus
Query: 9 catcttactgggcagcattggatgt-gtctggt-ctctaatactgcctggtaatgatga 65
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 10 catcttactgggcagcattggatgtaaactggtattctaatactgcctggtaatgatga 68
>RF00241;mir-8;BAAE01261092.1/748-823 8090:Oryzias latipes
(Japanese medaka)
Length = 76
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 40 tctctaatactgcctggtaatgatga 65
||||||||||||||||||||||||||
Sbjct: 43 tctctaatactgcctggtaatgatga 68
>RF00241;mir-8;ABQF01059078.1/1300-1375 59729:Taeniopygia guttata
Length = 76
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 41 ctctaatactgcctggtaatgatga 65
|||||||||||||||||||||||||
Sbjct: 44 ctctaatactgcctggtaatgatga 68
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 catcttactgggcagcattggatg 32
||||||||||||||||||||||||
Sbjct: 10 catcttactgggcagcattggatg 33
>RF00241;mir-8;CU855953.4/78255-78183 7955:Danio rerio (zebrafish)
Length = 73
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 40 tctctaatactgcctggtaatgatg 64
|||||||||||||||||||||||||
Sbjct: 41 tctctaatactgcctggtaatgatg 65
>RF00241;mir-8;CR925720.9/83468-83543 7955:Danio rerio (zebrafish)
Length = 76
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 42 tctaatactgcctggtaatgatga 65
||||||||||||||||||||||||
Sbjct: 45 tctaatactgcctggtaatgatga 68
>RF00982;mir-200;AACT01017089.1/11032-10948 51511:Ciona savignyi
Length = 85
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 44 taatactgcctggtaatgatga 65
||||||||||||||||||||||
Sbjct: 49 taatactgcctggtaatgatga 70
>RF00241;mir-8;AAFR03037717.1/371-448 13616:Monodelphis domestica
(gray short-tailed opossum)
Length = 78
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 39 gtctctaatactgcctggtaatgatg 64
||||||||||||||| ||||||||||
Sbjct: 44 gtctctaatactgccgggtaatgatg 69
>RF00241;mir-8;AY865826.1/65-141 9593:Gorilla gorilla (Western
Gorilla)
Length = 77
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 39 gtctctaatactgcctggtaatgatg 64
||||||||||||||| ||||||||||
Sbjct: 43 gtctctaatactgccgggtaatgatg 68
>RF00241;mir-8;ABRQ01038382.1/145-67 9813:Procavia capensis (cape
rock hyrax)
Length = 79
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 39 gtctctaatactgcctggtaatgatg 64
||||||||||||||| ||||||||||
Sbjct: 45 gtctctaatactgccgggtaatgatg 70
