miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00646;mir-204;AAFR03028287.1/51900-52003 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 104
Score = 127 bits (64), Expect = 2e-29
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 1 tggacttccctttgtcatcctatgcctgagaatatatgaaggaggctgggaaggcaaagg 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 22 tggacttccctttgtcatcctatgcctgagaatatatgaagggggctgggaaggcaaagg 81
Query: 61 gacgttca 68
||||||||
Sbjct: 82 gacgttca 89
>RF00646;mir-204;AC187999.1/39408-39305 9031:Gallus gallus
(chicken)
Length = 104
Score = 127 bits (64), Expect = 2e-29
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 1 tggacttccctttgtcatcctatgcctgagaatatatgaaggaggctgggaaggcaaagg 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 22 tggacttccctttgtcatcctatgcctgagaatatatgaagggggctgggaaggcaaagg 81
Query: 61 gacgttca 68
||||||||
Sbjct: 82 gacgttca 89
>RF00646;mir-204;AAVX01052255.1/1202-1305 7868:Callorhinchus milii
(ghost shark)
Length = 104
Score = 95.6 bits (48), Expect = 6e-20
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 5 cttccctttgtcatcctatgcctgagaatatatgaaggaggctgggaaggcaaagggacg 64
||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||| |
Sbjct: 26 cttccctttgtcatcctatgcctgaaattatatgaagggggctgggaaggcaaagggatg 85
Query: 65 ttca 68
||||
Sbjct: 86 ttca 89
>RF00646;mir-204;AANN01660997.1/781-876 9365:Erinaceus europaeus
(western European hedgehog)
Length = 96
Score = 58.0 bits (29), Expect = 1e-08
Identities = 57/65 (87%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 2 ggacttccctttgtcatcctatgcctgagaatatatgaaggaggctgggaaggcaaaggg 61
|||||||||||||||||| ||||||||| |||||| |||||| |||| || ||||| ||
Sbjct: 23 ggacttccctttgtcatcttatgcctgaaaatata-gaaggatgctgtgatggcaagagg 81
Query: 62 acgtt 66
|||||
Sbjct: 82 acgtt 86
>RF00646;mir-204;ABPM01009536.1/476-373 106582:Maylandia zebra
(zebra mbuna)
Length = 104
Score = 58.0 bits (29), Expect = 1e-08
Identities = 58/65 (89%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 1 tggacttccctttgtcatcctatgcctgagaat-atatgaaggaggctgggaaggcaaag 59
|||||||||||||||||||||||||||| || | ||| || | ||||||||||||||||
Sbjct: 22 tggacttccctttgtcatcctatgcctg-gattaatacaaaaggggctgggaaggcaaag 80
Query: 60 ggacg 64
|||||
Sbjct: 81 ggacg 85
>RF00646;mir-204;BX323080.10/77917-77816 7955:Danio rerio
(zebrafish)
Length = 102
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 tggacttccctttgtcatcctatgcctg 28
||||||||||||||||||||||||||||
Sbjct: 22 tggacttccctttgtcatcctatgcctg 49
>RF00646;mir-204;BAAE01000360.1/4392-4495 8090:Oryzias latipes
(Japanese medaka)
Length = 104
Score = 54.0 bits (27), Expect = 2e-07
Identities = 53/59 (89%), Gaps = 2/59 (3%)
Strand = Plus / Plus
Query: 5 cttccctttgtcatcctatgcctgagaat-atatgaaggaggctgggaaggcaaaggga 62
|||||||||||||||||||||||| |||| | || || | |||||||||||||||||||
Sbjct: 26 cttccctttgtcatcctatgcctg-gaatcaaataaaaggggctgggaaggcaaaggga 83
>RF00646;mir-204;AADN02066720.1/35863-35790 9031:Gallus gallus
(chicken)
Length = 74
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 5 cttccctttgtcatcctatgcctgag 30
||||||||||||||||||||||||||
Sbjct: 9 cttccctttgtcatcctatgcctgag 34
>RF00646;mir-204;AANH01001880.1/194334-194437 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 104
Score = 50.1 bits (25), Expect = 3e-06
Identities = 54/61 (88%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 5 cttccctttgtcatcctatgcctgagaat-atatgaaggaggctgggaaggcaaagggac 63
|||||||||||||||||||||||| || | ||| || | ||||||||||||||||||||
Sbjct: 26 cttccctttgtcatcctatgcctg-gactcatacaaaaggggctgggaaggcaaagggac 84
Query: 64 g 64
|
Sbjct: 85 g 85
>RF00646;mir-204;AAPN01089717.1/13112-13213 9258:Ornithorhynchus
anatinus (platypus)
Length = 102
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 5 cttccctttgtcatcctatgcctg 28
||||||||||||||||||||||||
Sbjct: 26 cttccctttgtcatcctatgcctg 49
>RF00646;mir-204;AAFR03022736.1/24229-24330 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 102
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 5 cttccctttgtcatcctatgcctg 28
||||||||||||||||||||||||
Sbjct: 26 cttccctttgtcatcctatgcctg 49
>RF00646;mir-204;AAWZ01036299.1/27929-27828 28377:Anolis
carolinensis (green anole)
Length = 102
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 5 cttccctttgtcatcctatgcctg 28
||||||||||||||||||||||||
Sbjct: 26 cttccctttgtcatcctatgcctg 49
>RF00646;mir-204;AADN02040397.1/21108-21007 9031:Gallus gallus
(chicken)
Length = 102
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 5 cttccctttgtcatcctatgcctg 28
||||||||||||||||||||||||
Sbjct: 26 cttccctttgtcatcctatgcctg 49
>RF00646;mir-204;CAAE01014555.1/947630-947730 99883:Tetraodon
nigroviridis
Length = 101
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 5 cttccctttgtcatcctatgcctg 28
||||||||||||||||||||||||
Sbjct: 26 cttccctttgtcatcctatgcctg 49
>RF00646;mir-204;CAAB01008029.1/2077-2179 31033:Takifugu rubripes
Length = 103
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 tggacttccctttgtcatcctatgcctg 28
||||||||||||||| ||||||||||||
Sbjct: 22 tggacttccctttgttatcctatgcctg 49
>RF00646;mir-204;AANH01001574.1/139065-138965 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 101
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 5 cttccctttgtcatcctatgcctg 28
||||||||||||||||||||||||
Sbjct: 26 cttccctttgtcatcctatgcctg 49
>RF00646;mir-204;BAAE01064700.1/3191-3291 8090:Oryzias latipes
(Japanese medaka)
Length = 101
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 5 cttccctttgtcatcctatgcctg 28
||||||||||||||||||||||||
Sbjct: 26 cttccctttgtcatcctatgcctg 49
>RF00646;mir-204;CR450827.5/52029-51927 7955:Danio rerio
(zebrafish)
Length = 103
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 ttccctttgtcatcctatgcctg 28
|||||||||||||||||||||||
Sbjct: 28 ttccctttgtcatcctatgcctg 50
>RF00646;mir-204;AAVX01164390.1/969-1070 7868:Callorhinchus milii
(ghost shark)
Length = 102
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 ttccctttgtcatcctatgcctg 28
|||||||||||||||||||||||
Sbjct: 27 ttccctttgtcatcctatgcctg 49
>RF00646;mir-204;AY866210.1/448-549 9600:Pongo pygmaeus (Bornean
orangutan)
Length = 102
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tggacttccctttgtcatcct 21
|||||||||||||||||||||
Sbjct: 22 tggacttccctttgtcatcct 42
