miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00656;mir-205;AAFC03121357.1/8897-8998 9913:Bos taurus (cattle)
Length = 102
Score = 129 bits (65), Expect = 5e-30
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 1 ctcttgtccttcattccaccggagtctgtctcatacccaaccagatttcagtggagtgaa 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 22 ctcttgtccttcattccaccggagtctgtctcgtacccaaccagatttcagtggagtgaa 81
Query: 61 gttcaggag 69
|||||||||
Sbjct: 82 gttcaggag 90
>RF00656;mir-205;ABRQ01315849.1/3505-3606 9813:Procavia capensis
(cape rock hyrax)
Length = 102
Score = 129 bits (65), Expect = 5e-30
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 1 ctcttgtccttcattccaccggagtctgtctcatacccaaccagatttcagtggagtgaa 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 22 ctcttgtccttcattccaccggagtctgtttcatacccaaccagatttcagtggagtgaa 81
Query: 61 gttcaggag 69
|||||||||
Sbjct: 82 gttcaggag 90
>RF00656;mir-205;AADN02044974.1/39714-39814 9031:Gallus gallus
(chicken)
Length = 101
Score = 99.6 bits (50), Expect = 4e-21
Identities = 56/58 (96%)
Strand = Plus / Plus
Query: 4 ttgtccttcattccaccggagtctgtctcatacccaaccagatttcagtggagtgaag 61
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 24 ttgtccttcattccaccggagtctgtctcgtacctaaccagatttcagtggagtgaag 81
>RF00656;mir-205;AAFR03023170.1/5678-5779 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 102
Score = 97.6 bits (49), Expect = 2e-20
Identities = 58/61 (95%)
Strand = Plus / Plus
Query: 1 ctcttgtccttcattccaccggagtctgtctcatacccaaccagatttcagtggagtgaa 60
||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||
Sbjct: 22 ctcttgtccttcattccaccggagtctgtctcatatctaatcagatttcagtggagtgaa 81
Query: 61 g 61
|
Sbjct: 82 g 82
>RF00656;mir-205;CAAA01026708.1/9339-9240 10090:Mus musculus
(house mouse)
Length = 100
Score = 97.6 bits (49), Expect = 2e-20
Identities = 65/69 (94%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 1 ctcttgtccttcattccaccggagtctgtctcatacccaaccagatttcagtggagtgaa 60
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 21 ctcttgtccttcattccaccggagtctgtcttat-gccaaccagatttcagtggagtgaa 79
Query: 61 gttcaggag 69
| |||||||
Sbjct: 80 gctcaggag 88
>RF00656;mir-205;AAWZ01003024.1/18367-18468 28377:Anolis
carolinensis (green anole)
Length = 102
Score = 91.7 bits (46), Expect = 1e-18
Identities = 55/58 (94%)
Strand = Plus / Plus
Query: 4 ttgtccttcattccaccggagtctgtctcatacccaaccagatttcagtggagtgaag 61
|||||||||||||||||||||||||||||||| | || ||||||||||||||||||||
Sbjct: 25 ttgtccttcattccaccggagtctgtctcatatctaatcagatttcagtggagtgaag 82
>RF00656;mir-205;ABQF01054274.1/5298-5198 59729:Taeniopygia
guttata
Length = 101
Score = 83.8 bits (42), Expect = 2e-16
Identities = 55/58 (94%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 4 ttgtccttcattccaccggagtctgtctcatacccaaccagatttcagtggagtgaag 61
||||||||||||||||||||||||||||| || | |||||||||||||||||||||||
Sbjct: 25 ttgtccttcattccaccggagtctgtctc-tagctaaccagatttcagtggagtgaag 81
>RF00656;mir-205;AALT01450952.1/1320-1220 42254:Sorex araneus
(European shrew)
Length = 101
Score = 81.8 bits (41), Expect = 1e-15
Identities = 54/57 (94%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 5 tgtccttcattccaccggagtctgtctcatacccaaccagatttcagtggagtgaag 61
|||||||||||||||||||||||||||| | | ||||||||||||||||||||||||
Sbjct: 26 tgtccttcattccaccggagtctgtctc-tgcacaaccagatttcagtggagtgaag 81
>RF00656;mir-205;AAKN02017853.1/245570-245471 10141:Cavia
porcellus (domestic guinea pig)
Length = 100
Score = 67.9 bits (34), Expect = 1e-11
Identities = 61/69 (88%), Gaps = 2/69 (2%)
Strand = Plus / Plus
Query: 1 ctcttgtccttcattccaccggagtctgtctcatacccaaccagatttcagtggagtgaa 60
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 22 ctcttgtccttcattccaccggagtctgtct--gcggcaaccagacttcagtggagtgaa 79
Query: 61 gttcaggag 69
| |||||||
Sbjct: 80 gctcaggag 88
>RF00656;mir-205;AAVX01484155.1/142-243 7868:Callorhinchus milii
(ghost shark)
Length = 102
Score = 67.9 bits (34), Expect = 1e-11
Identities = 53/58 (91%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 5 tgtccttcattccaccggagtctgtctcat-acccaaccagatttcagtggagtgaag 61
||||||||||||||||||||||||| ||| | |||||||||||||||||| ||||||
Sbjct: 25 tgtccttcattccaccggagtctgtgacataaaccaaccagatttcagtggggtgaag 82
>RF00656;mir-205;AANH01002613.1/123689-123785 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 97
Score = 60.0 bits (30), Expect = 4e-09
Identities = 52/58 (89%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 5 tgtccttcattccaccggagtctgtctcatacccaaccagatttcagtggagtgaagt 62
||||||||||||||||||||||||||| | | | ||||||||||||||| |||||||
Sbjct: 22 tgtccttcattccaccggagtctgtctgtttcac-accagatttcagtggtgtgaagt 78
>RF00656;mir-205;BAAF04011157.1/1235-1133 8090:Oryzias latipes
(Japanese medaka)
Length = 103
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 tgtccttcattccaccggagtctgt 29
|||||||||||||||||||||||||
Sbjct: 26 tgtccttcattccaccggagtctgt 50
>RF00656;mir-205;AL929087.4/70188-70086 7955:Danio rerio
(zebrafish)
Length = 103
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 7 tccttcattccaccggagtctgt 29
|||||||||||||||||||||||
Sbjct: 28 tccttcattccaccggagtctgt 50
>RF00656;mir-205;CAAB01006173.1/586-688 31033:Takifugu rubripes
Length = 103
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 7 tccttcattccaccggagtctgt 29
|||||||||||||||||||||||
Sbjct: 28 tccttcattccaccggagtctgt 50
>RF00656;mir-205;AANH01007448.1/5834-5732 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 103
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 7 tccttcattccaccggagtctgt 29
|||||||||||||||||||||||
Sbjct: 28 tccttcattccaccggagtctgt 50
>RF00656;mir-205;BAAE01019177.1/1934-2036 8090:Oryzias latipes
(Japanese medaka)
Length = 103
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 7 tccttcattccaccggagtctgt 29
|||||||||||||||||||||||
Sbjct: 28 tccttcattccaccggagtctgt 50
