miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00103;mir-1;AANN01270542.1/4439-4364 9365:Erinaceus europaeus
(western European hedgehog)
Length = 76
Score = 123 bits (62), Expect = 3e-28
Identities = 65/66 (98%)
Strand = Plus / Plus
Query: 3 gccacatgcttctttatatccccatacggattactttgctatggaatgtaaggaagtgtg 62
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 7 gccacatgcttctttatatccccatatggattactttgctatggaatgtaaggaagtgtg 66
Query: 63 tggttt 68
||||||
Sbjct: 67 tggttt 72
>RF00103;mir-1;ABRQ01222467.1/741-815 9813:Procavia capensis (cape
rock hyrax)
Length = 75
Score = 121 bits (61), Expect = 1e-27
Identities = 68/69 (98%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 1 aggccacatgcttctttatatccccatacggattactttgctatggaatgtaaggaagtg 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 5 aggccacatgcttctttatatccccatacggattac-ttgctatggaatgtaaggaagtg 63
Query: 61 tgtggtttc 69
|||||||||
Sbjct: 64 tgtggtttc 72
>RF00103;mir-1;ABRO01155645.1/17273-17348 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 76
Score = 111 bits (56), Expect = 1e-24
Identities = 62/64 (96%)
Strand = Plus / Plus
Query: 2 ggccacatgcttctttatatccccatacggattactttgctatggaatgtaaggaagtgt 61
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 6 ggccacatgcttctttatatccccatagggattactgtgctatggaatgtaaggaagtgt 65
Query: 62 gtgg 65
||||
Sbjct: 66 gtgg 69
>RF00103;mir-1;AALT01102453.1/1268-1343 42254:Sorex araneus
(European shrew)
Length = 76
Score = 101 bits (51), Expect = 1e-21
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 6 acatgcttctttatatccccatacggattactttgctatggaatgtaaggaagtgtgtgg 65
|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 10 acatgcttctttatatccccatacggatctcttggctatggaatgtaaggaagtgtgtgg 69
Query: 66 ttt 68
|||
Sbjct: 70 ttt 72
>RF00103;mir-1;AADN02018283.1/5522-5597 9031:Gallus gallus
(chicken)
Length = 76
Score = 95.6 bits (48), Expect = 7e-20
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 6 acatgcttctttatatccccatacggattactttgctatggaatgtaaggaagtgtgtgg 65
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 10 acatgcttctttatatccccatatggattaggctgctatggaatgtaaggaagtgtgtgg 69
Query: 66 tttc 69
||||
Sbjct: 70 tttc 73
>RF00103;mir-1;AAWZ01012531.1/31936-31861 28377:Anolis
carolinensis (green anole)
Length = 76
Score = 87.7 bits (44), Expect = 2e-17
Identities = 59/64 (92%)
Strand = Plus / Plus
Query: 6 acatgcttctttatatccccatacggattactttgctatggaatgtaaggaagtgtgtgg 65
||||||||||||||||| ||||| | ||| | ||||||||||||||||||||||||||||
Sbjct: 10 acatgcttctttatatctccatatgaattgccttgctatggaatgtaaggaagtgtgtgg 69
Query: 66 tttc 69
||||
Sbjct: 70 tttc 73
>RF00103;mir-1;AAHY01004442.1/497-572 10090:Mus musculus (house
mouse)
Length = 76
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 41 ctatggaatgtaaggaagtgtgtggttt 68
||||||||||||||||||||||||||||
Sbjct: 45 ctatggaatgtaaggaagtgtgtggttt 72
>RF00103;mir-1;BAAF04047944.1/3728-3653 8090:Oryzias latipes
(Japanese medaka)
Length = 76
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 42 tatggaatgtaaggaagtgtgtggtttc 69
||||||||||||||||||||||||||||
Sbjct: 46 tatggaatgtaaggaagtgtgtggtttc 73
>RF00103;mir-1;CAAK05040482.1/7048-7123 7955:Danio rerio
(zebrafish)
Length = 76
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 41 ctatggaatgtaaggaagtgtgtgg 65
|||||||||||||||||||||||||
Sbjct: 45 ctatggaatgtaaggaagtgtgtgg 69
>RF00103;mir-1;AAVX01164741.1/393-468 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 42.1 bits (21), Expect = 8e-04
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 11 cttctttatatccccatacggattactttgctatggaatgtaaggaagt 59
|||||| |||| |||||| | | | |||||||||||||||||| |||||
Sbjct: 15 cttcttcatatgcccatatgaaatgctttgctatggaatgtaaagaagt 63
