miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00749;mir-208;ABRQ01358819.1/2881-2802 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 129 bits (65), Expect = 5e-30
Identities = 74/77 (96%)
Strand = Plus / Plus
Query: 1 cctctcagggaagctttttgctcgcgttatgtttctcatccgaatataagacgaacaaaa 60
|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 4 cctctcagggaagctttttgctcgcgttatgtttcttatttgaatataagacgaacaaaa 63
Query: 61 ggtttgtctgagggcag 77
|||||||||||||||||
Sbjct: 64 ggtttgtctgagggcag 80
>RF00749;mir-208;AAKN02019132.1/109134-109213 10141:Cavia
porcellus (domestic guinea pig)
Length = 80
Score = 117 bits (59), Expect = 2e-26
Identities = 71/75 (94%)
Strand = Plus / Plus
Query: 1 cctctcagggaagctttttgctcgcgttatgtttctcatccgaatataagacgaacaaaa 60
||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 4 cctctcaggaaagctttttgctcgaattatgtttctcatccaaatataagacgaacaaaa 63
Query: 61 ggtttgtctgagggc 75
|||||||||||||||
Sbjct: 64 ggtttgtctgagggc 78
>RF00749;mir-208;ABRT010337019.1/103-26 9478:Tarsius syrichta
(Philippine tarsier)
Length = 78
Score = 91.7 bits (46), Expect = 1e-18
Identities = 67/73 (91%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 1 cctctcagggaagctttttgctcgcgttatgtttctcatccgaatataagacgaacaaaa 60
|||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||
Sbjct: 4 cctctcagggaagctttttgctcgaattatgtttctcattcgaatataagacgaccaaa- 62
Query: 61 ggtttgtctgagg 73
||||||||||||
Sbjct: 63 -gtttgtctgagg 74
