miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: BLAST

BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00662;mir-132;ABRQ01002353.1/3673-3585 9813:Procavia capensis
          (cape rock hyrax)
          Length = 89

 Score =  119 bits (60), Expect = 4e-27
 Identities = 60/60 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  ccttggctctagactgcttactgcccgggccgccctcagtaacagtctccagtcacggcc 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17 ccttggctctagactgcttactgcccgggccgccctcagtaacagtctccagtcacggcc 76

>RF00662;mir-132;AAPE01105627.1/5025-4939 59463:Myotis lucifugus
          (little brown bat)
          Length = 87

 Score = 65.9 bits (33), Expect = 5e-11
 Identities = 54/60 (90%), Gaps = 2/60 (3%)
 Strand = Plus / Plus

                                                                      
Query: 1  ccttggctctagactgcttactgcccgggccgccctcagtaacagtctccagtcacggcc 60
          ||||||||  ||||||||||||||||||  |||||  |||||||||||||||||||||||
Sbjct: 17 ccttggctgcagactgcttactgcccgg--cgccccgagtaacagtctccagtcacggcc 74

>RF00662;mir-132;CAAK05007784.1/2841-2935 7955:Danio rerio
          (zebrafish)
          Length = 95

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  ccttggctctagactgcttactgc 24
          ||||||||||||||||||||||||
Sbjct: 17 ccttggctctagactgcttactgc 40

>RF00662;mir-132;ABPM01043889.1/132-226 106582:Maylandia zebra
          (zebra mbuna)
          Length = 95

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  ccttggctctagactgcttactgc 24
          ||||||||||||||||||||||||
Sbjct: 17 ccttggctctagactgcttactgc 40

>RF00662;mir-132;BAAF04037894.1/2420-2326 8090:Oryzias latipes
          (Japanese medaka)
          Length = 95

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  ccttggctctagactgcttactgc 24
          ||||||||||||||||||||||||
Sbjct: 17 ccttggctctagactgcttactgc 40