miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00660;mir-214;AAWZ01045430.1/14604-14713 28377:Anolis
carolinensis (green anole)
Length = 110
Score = 121 bits (61), Expect = 1e-27
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 1 tctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacagacag 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 28 tctgcctgtctacacttgctgtgcagaacatcctctcacctgtacagcaggcacagacag 87
Query: 61 gcagt 65
|||||
Sbjct: 88 gcagt 92
>RF00660;mir-214;CT563248.9/82929-82824 7955:Danio rerio
(zebrafish)
Length = 106
Score = 87.7 bits (44), Expect = 1e-17
Identities = 60/64 (93%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 1 tctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacagacag 60
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 25 tctgcctgtctacacttgctgtgcagaacttcc-tgcacctgtacagcaggcacagacag 83
Query: 61 gcag 64
||||
Sbjct: 84 gcag 87
>RF00660;mir-214;BAAF04061048.1/6848-6953 8090:Oryzias latipes
(Japanese medaka)
Length = 106
Score = 87.7 bits (44), Expect = 1e-17
Identities = 59/64 (92%)
Strand = Plus / Plus
Query: 1 tctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacagacag 60
||||||| |||||||||||||||||||| |||| | |||||||||||||||||||||||
Sbjct: 25 tctgcctatctacacttgctgtgcagaatatcctccaacctgtacagcaggcacagacag 84
Query: 61 gcag 64
||||
Sbjct: 85 gcag 88
>RF00660;mir-214;AADN02033953.1/92-201 9031:Gallus gallus
(chicken)
Length = 110
Score = 81.8 bits (41), Expect = 9e-16
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 1 tctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacagacag 60
|||| ||||||||||||||||| || ||||||| |||||||||||||| || ||||||||
Sbjct: 28 tctgtctgtctacacttgctgtccataacatccactcacctgtacagcgggaacagacag 87
Query: 61 gcagt 65
|||||
Sbjct: 88 gcagt 92
>RF00660;mir-214;CAAB01001079.1/28431-28538 31033:Takifugu
rubripes
Length = 108
Score = 81.8 bits (41), Expect = 9e-16
Identities = 59/64 (92%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 1 tctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacagacag 60
||||||||||||||||||||||||||| | || ||| ||||||||||||||||||||||
Sbjct: 28 tctgcctgtctacacttgctgtgcagaccttctgct--cctgtacagcaggcacagacag 85
Query: 61 gcag 64
||||
Sbjct: 86 gcag 89
>RF00660;mir-214;BAAE01167369.1/1925-1818 8090:Oryzias latipes
(Japanese medaka)
Length = 108
Score = 81.8 bits (41), Expect = 9e-16
Identities = 59/64 (92%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 1 tctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacagacag 60
||||||||||||||||||||||||||| | || ||| ||||||||||||||||||||||
Sbjct: 28 tctgcctgtctacacttgctgtgcagaccttctgct--cctgtacagcaggcacagacag 85
Query: 61 gcag 64
||||
Sbjct: 86 gcag 89
>RF00660;mir-214;CAAB01000803.1/19699-19808 31033:Takifugu
rubripes
Length = 110
Score = 79.8 bits (40), Expect = 4e-15
Identities = 58/64 (90%)
Strand = Plus / Plus
Query: 1 tctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacagacag 60
||||||| ||| |||||||||||||||| |||| | |||||||||||||||||||||||
Sbjct: 28 tctgcctatctccacttgctgtgcagaatatcctccaacctgtacagcaggcacagacag 87
Query: 61 gcag 64
||||
Sbjct: 88 gcag 91
>RF00660;mir-214;AANH01005434.1/26064-26173 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 110
Score = 79.8 bits (40), Expect = 4e-15
Identities = 58/64 (90%)
Strand = Plus / Plus
Query: 1 tctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacagacag 60
||||||| |||||||||||||||||||| | || | |||||||||||||||||||||||
Sbjct: 28 tctgcctatctacacttgctgtgcagaataacctccaacctgtacagcaggcacagacag 87
Query: 61 gcag 64
||||
Sbjct: 88 gcag 91
