miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00452;mir-172;FM163855.1/191-306 3702:Arabidopsis thaliana (thale
cress)
Length = 116
Score = 153 bits (77), Expect = 8e-37
Identities = 108/117 (92%), Gaps = 1/117 (0%)
Strand = Plus / Plus
Query: 18 ttgtttgctgctgtggcatcatcaagattcacatccgttgatggacggtggtggttcact 77
||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 1 ttgttggctgctgtggcatcatcaagattcacatctgttgatggacggtggtgattcact 60
Query: 78 ctacccaaagttctcttgtgaaaatgggaatcttgatgatgctgcatcggtaatcaa 134
|| | |||||||||| | |||||||| ||||||||||||||||||||||| ||||||
Sbjct: 61 ctccacaaagttctc-tatgaaaatgagaatcttgatgatgctgcatcggcaatcaa 116
>RF00452;mir-172;ABIM01012229.1/3274-3102 3649:Carica papaya
(papaya)
Length = 173
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 96 tgaaaatgggaatcttgatgatgctgcatcgg 127
|||||||| |||||||||||||||||||||||
Sbjct: 135 tgaaaatgagaatcttgatgatgctgcatcgg 166
>RF00452;mir-172;ABIM01015449.1/13104-12974 3649:Carica papaya
(papaya)
Length = 131
Score = 54.0 bits (27), Expect = 6e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 99 aaatgggaatcttgatgatgctgcatc 125
|||||||||||||||||||||||||||
Sbjct: 96 aaatgggaatcttgatgatgctgcatc 122
>RF00452;mir-172;AARH01003860.1/86743-86610 3694:Populus trichocarpa
Length = 134
Score = 54.0 bits (27), Expect = 6e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 101 atgggaatcttgatgatgctgcatcgg 127
|||||||||||||||||||||||||||
Sbjct: 101 atgggaatcttgatgatgctgcatcgg 127
>RF00452;mir-172;AARH01000428.1/33766-33584 3694:Populus trichocarpa
Length = 183
Score = 54.0 bits (27), Expect = 6e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 101 atgggaatcttgatgatgctgcatcgg 127
|||||||||||||||||||||||||||
Sbjct: 150 atgggaatcttgatgatgctgcatcgg 176
>RF00452;mir-172;AP003298.3/17210-16973 39947:Oryza sativa Japonica
Group
Length = 238
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 102 tgggaatcttgatgatgctgcatcgg 127
||||||||||||||||||||||||||
Sbjct: 206 tgggaatcttgatgatgctgcatcgg 231
>RF00452;mir-172;CAAP02002749.1/38930-38796 29760:Vitis vinifera
Length = 135
Score = 50.1 bits (25), Expect = 9e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 101 atgggaatcttgatgatgctgcatc 125
|||||||||||||||||||||||||
Sbjct: 102 atgggaatcttgatgatgctgcatc 126
>RF00452;mir-172;AC189648.2/24074-23978 51351:Brassica rapa subsp.
pekinensis
Length = 97
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 102 tgggaatcttgatgatgctgcatc 125
||||||||||||||||||||||||
Sbjct: 65 tgggaatcttgatgatgctgcatc 88
>RF00452;mir-172;EU549250.1/242-366 3702:Arabidopsis thaliana (thale
cress)
Length = 125
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 102 tgggaatcttgatgatgctgcatc 125
||||||||||||||||||||||||
Sbjct: 93 tgggaatcttgatgatgctgcatc 116
>RF00452;mir-172;AP006162.2/95640-95748 39947:Oryza sativa
Japonica Group
Length = 109
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 30 gtggcatcatcaagattcacatcc 53
||||||||||||||||||||||||
Sbjct: 13 gtggcatcatcaagattcacatcc 36
>RF00452;mir-172;ABIM01001078.1/716-916 3649:Carica papaya (papaya)
Length = 201
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 101 atgggaatcttgatgatgctgca 123
|||||||||||||||||||||||
Sbjct: 168 atgggaatcttgatgatgctgca 190
>RF00452;mir-172;AARH01003915.1/155600-155740 3694:Populus
trichocarpa
Length = 141
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 105 gaatcttgatgatgctgcatcgg 127
|||||||||||||||||||||||
Sbjct: 112 gaatcttgatgatgctgcatcgg 134
>RF00452;mir-172;AC182714.2/88903-88742 3694:Populus trichocarpa
Length = 162
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 105 gaatcttgatgatgctgcatcgg 127
|||||||||||||||||||||||
Sbjct: 133 gaatcttgatgatgctgcatcgg 155
>RF00452;mir-172;AASG02005670.1/14724-14879 3988:Ricinus communis
(castor bean)
Length = 156
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 101 atgggaatcttgatgatgctgca 123
|||||||||||||||||||||||
Sbjct: 123 atgggaatcttgatgatgctgca 145
>RF00452;mir-172;BABK01039752.1/451-284 34305:Lotus japonicus
Length = 168
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 99 aaatgggaatcttgatgatgctgcatc 125
||||| |||||||||||||||||||||
Sbjct: 133 aaatgagaatcttgatgatgctgcatc 159
>RF00452;mir-172;CAAP02003282.1/14594-14705 29760:Vitis vinifera
Length = 112
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 105 gaatcttgatgatgctgcatcgg 127
|||||||||||||||||||||||
Sbjct: 83 gaatcttgatgatgctgcatcgg 105
>RF00452;mir-172;AM457961.2/1662-1782 29760:Vitis vinifera
Length = 121
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 105 gaatcttgatgatgctgcatcgg 127
|||||||||||||||||||||||
Sbjct: 92 gaatcttgatgatgctgcatcgg 114
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 18 ttgtttgctgctgtggcatcatcaagattcacat 51
|||||||| | ||| |||||||||||||||||||
Sbjct: 1 ttgtttgcaggtgtagcatcatcaagattcacat 34
>RF00452;mir-172;CAAP02000586.1/29172-29291 29760:Vitis vinifera
Length = 120
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 105 gaatcttgatgatgctgcatcgg 127
|||||||||||||||||||||||
Sbjct: 91 gaatcttgatgatgctgcatcgg 113
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 18 ttgtttgctgctgtggcatcatcaagattcacat 51
|||||||| | ||| |||||||||||||||||||
Sbjct: 1 ttgtttgcaggtgtagcatcatcaagattcacat 34
>RF00452;mir-172;EU945504.1/992-1139 4577:Zea mays
Length = 148
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 99 aaatgggaatcttgatgatgctgcatc 125
||||| |||||||||||||||||||||
Sbjct: 113 aaatgagaatcttgatgatgctgcatc 139
>RF00452;mir-172;AC165172.2/39243-39397 4577:Zea mays
Length = 155
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 102 tgggaatcttgatgatgctgcat 124
|||||||||||||||||||||||
Sbjct: 123 tgggaatcttgatgatgctgcat 145
>RF00452;mir-172;EU974220.1/371-523 4577:Zea mays
Length = 153
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 102 tgggaatcttgatgatgctgcat 124
|||||||||||||||||||||||
Sbjct: 121 tgggaatcttgatgatgctgcat 143
>RF00452;mir-172;ABXC01002369.1/66790-66601 4558:Sorghum bicolor
(sorghum)
Length = 190
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 102 tgggaatcttgatgatgctgcat 124
|||||||||||||||||||||||
Sbjct: 158 tgggaatcttgatgatgctgcat 180
>RF00452;mir-172;ABIM01030483.1/4658-4870 3649:Carica papaya
(papaya)
Length = 213
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 105 gaatcttgatgatgctgcatcg 126
||||||||||||||||||||||
Sbjct: 184 gaatcttgatgatgctgcatcg 205
>RF00452;mir-172;AARH01004394.1/257332-257189 3694:Populus
trichocarpa
Length = 144
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 102 tgggaatcttgatgatgctgca 123
||||||||||||||||||||||
Sbjct: 112 tgggaatcttgatgatgctgca 133
>RF00452;mir-172;AY728437.1/1-132 3694:Populus trichocarpa
Length = 132
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 102 tgggaatcttgatgatgctgca 123
||||||||||||||||||||||
Sbjct: 106 tgggaatcttgatgatgctgca 127
>RF00452;mir-172;AASG02011039.1/5310-5468 3988:Ricinus communis
(castor bean)
Length = 159
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 18 ttgtttgctgctgtggcatcatcaagattcacat 51
|||||||| | ||| |||||||||||||||||||
Sbjct: 1 ttgtttgcgggtgtagcatcatcaagattcacat 34
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 96 tgaaaatgggaatcttgatgatgctgcatc 125
||||| || |||||||||||||||||||||
Sbjct: 121 tgaaagtgagaatcttgatgatgctgcatc 150
>RF00452;mir-172;BABK01027900.1/1116-1276 34305:Lotus japonicus
Length = 161
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 18 ttgtttgctgctgtggcatcatcaagattcacat 51
|||||||||| ||| ||| |||||||||||||||
Sbjct: 1 ttgtttgctgatgtagcaccatcaagattcacat 34
>RF00452;mir-172;AM481129.2/11694-11833 29760:Vitis vinifera
Length = 140
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 102 tgggaatcttgatgatgctgca 123
||||||||||||||||||||||
Sbjct: 108 tgggaatcttgatgatgctgca 129
