miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00654;mir-216;AALT01617623.1/4047-4135 42254:Sorex araneus
(European shrew)
Length = 89
Score = 137 bits (69), Expect = 3e-32
Identities = 78/81 (96%)
Strand = Plus / Plus
Query: 6 agactggaaaatctctgcaggcaaatgtgatgtcactaaagaaatcacacacttacccgt 65
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 8 agactggaaaatctctgcaggcaaatgtgatgtcactaaataattcacacacttacccgt 67
Query: 66 agagattctacagtctgacat 86
||||||||| |||||||||||
Sbjct: 68 agagattcttcagtctgacat 88
>RF00654;mir-216;ABRO01106143.1/1589-1501 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 89
Score = 131 bits (66), Expect = 2e-30
Identities = 78/82 (95%)
Strand = Plus / Plus
Query: 1 gtggcagactggaaaatctctgcaggcaaatgtgatgtcactaaagaaatcacacactta 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 3 gtggcagactggaaaatctctgcaggcaaatgtgatgtcactgaagaaatcacacactta 62
Query: 61 cccgtagagattctacagtctg 82
||| ||||||||| |||||||
Sbjct: 63 cccacagagattcttcagtctg 84
>RF00654;mir-216;BX284627.4/32714-32802 10090:Mus musculus (house
mouse)
Length = 89
Score = 127 bits (64), Expect = 2e-29
Identities = 79/84 (94%)
Strand = Plus / Plus
Query: 2 tggcagactggaaaatctctgcaggcaaatgtgatgtcactaaagaaatcacacacttac 61
||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 4 tggcagactgggaaatctctgcaggcaaatgtgatgtcactgaagaaaccacacacttac 63
Query: 62 ccgtagagattctacagtctgaca 85
| ||||||||||| ||||||||||
Sbjct: 64 ctgtagagattcttcagtctgaca 87
>RF00654;mir-216;AAKN02040735.1/24209-24296 10141:Cavia porcellus
(domestic guinea pig)
Length = 88
Score = 121 bits (61), Expect = 2e-27
Identities = 80/85 (94%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 1 gtggcagactggaaaatctctgcaggcaaatgtgatgtcactaaagaaatcacacactta 60
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 3 gtggcagactggaaaatctctgcaggcaaatgtgatgtcactgaag-aatcacacactta 61
Query: 61 cccgtagagattctacagtctgaca 85
|| ||| ||||||| ||||||||||
Sbjct: 62 cctgtaaagattctgcagtctgaca 86
>RF00654;mir-216;ABRQ01364800.1/1509-1421 9813:Procavia capensis
(cape rock hyrax)
Length = 89
Score = 113 bits (57), Expect = 4e-25
Identities = 78/85 (91%)
Strand = Plus / Plus
Query: 1 gtggcagactggaaaatctctgcaggcaaatgtgatgtcactaaagaaatcacacactta 60
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 3 gtggcagactggaaaatctctgcaggcaaatgtgatgtcatgaaagaaaccacacactta 62
Query: 61 cccgtagagattctacagtctgaca 85
|| |||||||| || | ||||||||
Sbjct: 63 cctgtagagatgctgcggtctgaca 87
>RF00654;mir-216;AAFR03002982.1/16332-16244 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 89
Score = 93.7 bits (47), Expect = 3e-19
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 4 gcagactggaaaatctctgcaggcaaatgtgatgtcactaaagaaatcacacacttaccc 63
||||||||| ||||||||||||||||||||| |||| ||| || |||||||| ||||||
Sbjct: 6 gcagactgggaaatctctgcaggcaaatgtggtgtcgctatagttatcacacaattaccc 65
Query: 64 gtagagattctacagtctgacat 86
||||||||||| || ||||||||
Sbjct: 66 gtagagattctgcaatctgacat 88
>RF00654;mir-216;AAIY01782907.1/856-768 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 89
Score = 87.7 bits (44), Expect = 2e-17
Identities = 74/84 (88%)
Strand = Plus / Plus
Query: 1 gtggcagactggaaaatctctgcaggcaaatgtgatgtcactaaagaaatcacacactta 60
|||||||||||| |||||||||||||||||||||| || || ||||||||||||||
Sbjct: 3 gtggcagactgggaaatctctgcaggcaaatgtgacgttgctgccgaaatcacacacttg 62
Query: 61 cccgtagagattctacagtctgac 84
||||||||||| || |||||||||
Sbjct: 63 cccgtagagatgctgcagtctgac 86
>RF00654;mir-216;AADN02046841.1/28673-28585 9031:Gallus gallus
(chicken)
Length = 89
Score = 83.8 bits (42), Expect = 3e-16
Identities = 69/78 (88%)
Strand = Plus / Plus
Query: 5 cagactggaaaatctctgcaggcaaatgtgatgtcactaaagaaatcacacacttacccg 64
|||||||| |||||||||||||||||||||||||| || || |||| |||| ||||| |
Sbjct: 7 cagactgggaaatctctgcaggcaaatgtgatgtctttatagcaatctcacaattacctg 66
Query: 65 tagagattctacagtctg 82
||||||||||||| ||||
Sbjct: 67 tagagattctacaatctg 84
>RF00654;mir-216;AAPN01112677.1/19396-19484 9258:Ornithorhynchus
anatinus (platypus)
Length = 89
Score = 61.9 bits (31), Expect = 1e-09
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 4 gcagactggaaaatctctgcaggcaaatgtgatgtcactaaagaaatcacacacttaccc 63
||||||||| |||||||||| |||||||||| |||||| || |||| |||| |||||
Sbjct: 6 gcagactgggaaatctctgctggcaaatgtggtgtcacggtagcaatcgcacaattacct 65
Query: 64 gtagagattct 74
|||||||||||
Sbjct: 66 gtagagattct 76
>RF00654;mir-216;AAWZ01022334.1/1559-1470 28377:Anolis
carolinensis (green anole)
Length = 90
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 5 cagactggaaaatctctgcaggcaaatgtgatgtc 39
||||||| ||||||||||||||||||||||||||
Sbjct: 7 cagactgagaaatctctgcaggcaaatgtgatgtc 41
>RF00654;mir-216;AAVX01147466.1/944-1031 7868:Callorhinchus milii
(ghost shark)
Length = 88
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 5 cagactggaaaatctctgcaggcaaatgtga 35
||||||||| ||||||||||||||| |||||
Sbjct: 7 cagactggataatctctgcaggcaactgtga 37
>RF00654;mir-216;AACT01058314.1/9825-9745 51511:Ciona savignyi
Length = 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 15 aatctctgcaggcaaatgtgatgtca 40
||||||||||||||| ||||||||||
Sbjct: 17 aatctctgcaggcaactgtgatgtca 42
