miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00673;mir-217;AAPY01560156.1/2469-2364 37347:Tupaia belangeri
(northern tree shrew)
Length = 106
Score = 105 bits (53), Expect = 5e-23
Identities = 56/57 (98%)
Strand = Plus / Plus
Query: 1 tactgcatcaggaactgattggataagaatcagtcaccatcagttcctaatgcattg 57
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 32 tactgcatcaggaactgattggataagaatcggtcaccatcagttcctaatgcattg 88
>RF00673;mir-217;AAGW01552079.1/597-492 9986:Oryctolagus cuniculus
(rabbit)
Length = 106
Score = 105 bits (53), Expect = 5e-23
Identities = 56/57 (98%)
Strand = Plus / Plus
Query: 1 tactgcatcaggaactgattggataagaatcagtcaccatcagttcctaatgcattg 57
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 32 tactgcatcaggaactgattggataagaatctgtcaccatcagttcctaatgcattg 88
>RF00673;mir-217;AADN02046841.1/20616-20511 9031:Gallus gallus
(chicken)
Length = 106
Score = 105 bits (53), Expect = 5e-23
Identities = 56/57 (98%)
Strand = Plus / Plus
Query: 1 tactgcatcaggaactgattggataagaatcagtcaccatcagttcctaatgcattg 57
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 32 tactgcatcaggaactgattggataataatcagtcaccatcagttcctaatgcattg 88
>RF00673;mir-217;AAEX02023028.1/182472-182367 9615:Canis lupus
familiaris (dog)
Length = 106
Score = 97.6 bits (49), Expect = 1e-20
Identities = 55/57 (96%)
Strand = Plus / Plus
Query: 1 tactgcatcaggaactgattggataagaatcagtcaccatcagttcctaatgcattg 57
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 32 tactgcatcaggaactgattggataagaatgggtcaccatcagttcctaatgcattg 88
>RF00673;mir-217;AAQR01685763.1/646-752 30611:Otolemur garnettii
(small-eared galago)
Length = 107
Score = 91.7 bits (46), Expect = 8e-19
Identities = 56/58 (96%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 1 tactgcatcagg-aactgattggataagaatcagtcaccatcagttcctaatgcattg 57
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 32 tactgcatcagggaactgattggataagaatcagtcaccatcagttcctcatgcattg 89
>RF00673;mir-217;AALT01617638.1/400-505 42254:Sorex araneus
(European shrew)
Length = 106
Score = 89.7 bits (45), Expect = 3e-18
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 1 tactgcatcaggaactgattggataagaatcagtcaccatcagttcctaatgcattg 57
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 32 tactgcatcaggaactgattggataaaaatgggtcaccatcagttcctaatgcattg 88
>RF00673;mir-217;AAIY01412982.1/1242-1137 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 106
Score = 83.8 bits (42), Expect = 2e-16
Identities = 51/54 (94%)
Strand = Plus / Plus
Query: 1 tactgcatcaggaactgattggataagaatcagtcaccatcagttcctaatgca 54
||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||
Sbjct: 32 tactgcatcaggaactgatcggataagtatctgtcaccatcagttcctaatgca 85
>RF00673;mir-217;AANN01395868.1/718-823 9365:Erinaceus europaeus
(western European hedgehog)
Length = 106
Score = 79.8 bits (40), Expect = 3e-15
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 1 tactgcatcaggaactgattggataagaatcagtcaccatcagttcctaatgcatt 56
||||||||||||||||||||| |||||||| | ||||||||||||||||||||||
Sbjct: 32 tactgcatcaggaactgattgtataagaatgtgccaccatcagttcctaatgcatt 87
>RF00673;mir-217;AAWZ01022332.1/98697-98592 28377:Anolis
carolinensis (green anole)
Length = 106
Score = 65.9 bits (33), Expect = 5e-11
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 1 tactgcatcaggaactgattggataagaatcagtcaccatcagttcctaatgcattg 57
|||||||||||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct: 32 tactgcatcaggaactgattggggaataatcatgtaccatcagttcctaatgcattg 88
>RF00673;mir-217;BX321898.29/71915-71810 7955:Danio rerio
(zebrafish)
Length = 106
Score = 52.0 bits (26), Expect = 7e-07
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 1 tactgcatcaggaactgattggataagaatcagtcaccatcagttcctaatgca 54
|||||||||||||||||||||||| | | |||| |||||||||||| |||||
Sbjct: 32 tactgcatcaggaactgattggatgatattcaggagccatcagttcctgatgca 85
>RF00673;mir-217;AAGU02318163.1/3864-3759 9785:Loxodonta africana
(African savanna elephant)
Length = 106
Score = 50.1 bits (25), Expect = 3e-06
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 1 tactgcatcaggaactgattggataagaatcagtcaccatcagttcctaatgc 53
||||||||||||||||||| || |||| ||| ||||| ||| ||||||||||
Sbjct: 32 tactgcatcaggaactgatcggttaagtatccgtcactgtcaattcctaatgc 84
>RF00673;mir-217;ABRQ01669115.1/1422-1321 9813:Procavia capensis
(cape rock hyrax)
Length = 102
Score = 50.1 bits (25), Expect = 3e-06
Identities = 50/57 (87%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 1 tactgcatcaggaactgattggataagaatcagtcaccatcagttcctaatgcattg 57
|||||||||||||| ||| ||||||| ||| ||||||||||| | |||||||||||
Sbjct: 29 tactgcatcaggaaatgactggataaatatctgtcaccatcagct-ctaatgcattg 84
>RF00673;mir-217;ABEP02005709.1/2697-2622 7739:Branchiostoma
floridae (Florida lancelet)
Length = 76
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tactgcatcaggaactgattggat 24
||||||||||||||||||||||||
Sbjct: 11 tactgcatcaggaactgattggat 34
>RF00673;mir-217;CAAB01000324.1/13656-13761 31033:Takifugu
rubripes
Length = 106
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tactgcatcaggaactgattgg 22
||||||||||||||||||||||
Sbjct: 32 tactgcatcaggaactgattgg 53
>RF00673;mir-217;AANH01005109.1/22353-22248 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 106
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tactgcatcaggaactgattgg 22
||||||||||||||||||||||
Sbjct: 32 tactgcatcaggaactgattgg 53
>RF00673;mir-217;BAAE01230814.1/1025-922 8090:Oryzias latipes
(Japanese medaka)
Length = 104
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tactgcatcaggaactgattgg 22
||||||||||||||||||||||
Sbjct: 30 tactgcatcaggaactgattgg 51
