miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00255;mir-218;AADN02015265.1/7283-7378 9031:Gallus gallus
(chicken)
Length = 96
Score = 99.6 bits (50), Expect = 4e-21
Identities = 59/62 (95%)
Strand = Plus / Plus
Query: 1 ttgtgcttgatctaaccatgtggttgccaggtatgagtaaaacatggttccgtcaagcac 60
|||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 18 ttgtgcttgatctaaccatgtggttgtgaggtatgagtaaaacatggttctgtcaagcac 77
Query: 61 ca 62
||
Sbjct: 78 ca 79
>RF00255;mir-218;AAVX01277185.1/1303-1208 7868:Callorhinchus milii
(ghost shark)
Length = 96
Score = 91.7 bits (46), Expect = 9e-19
Identities = 58/62 (93%)
Strand = Plus / Plus
Query: 1 ttgtgcttgatctaaccatgtggttgccaggtatgagtaaaacatggttccgtcaagcac 60
||||||||||||||||||||||||||| ||||| || ||||||||||||| |||||||||
Sbjct: 18 ttgtgcttgatctaaccatgtggttgcaaggtacgaataaaacatggttctgtcaagcac 77
Query: 61 ca 62
||
Sbjct: 78 ca 79
>RF00255;mir-218;AAVX01056473.1/1147-1242 7868:Callorhinchus milii
(ghost shark)
Length = 96
Score = 83.8 bits (42), Expect = 2e-16
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 1 ttgtgcttgatctaaccatgtggttgccaggtatgagtaaaacatggttccgtcaagcac 60
|||||||||||||||||||||| || | ||||||||||||||||||||| |||||||||
Sbjct: 18 ttgtgcttgatctaaccatgtgcttccaaggtatgagtaaaacatggttttgtcaagcac 77
Query: 61 ca 62
||
Sbjct: 78 ca 79
>RF00255;mir-218;BAAE01009772.1/4377-4476 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 56.0 bits (28), Expect = 5e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 ttgtgcttgatctaaccatgtggttgccaggt 32
||||||||||||||||||||||| ||||||||
Sbjct: 18 ttgtgcttgatctaaccatgtggctgccaggt 49
>RF00255;mir-218;CU550699.5/12753-12848 7955:Danio rerio
(zebrafish)
Length = 96
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 ttgtgcttgatctaaccatgtggttgc 27
|||||||||||||||||||||||||||
Sbjct: 18 ttgtgcttgatctaaccatgtggttgc 44
>RF00255;mir-218;AAPN01020455.1/68716-68811 9258:Ornithorhynchus
anatinus (platypus)
Length = 96
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ttgtgcttgatctaaccatgtggt 24
||||||||||||||||||||||||
Sbjct: 18 ttgtgcttgatctaaccatgtggt 41
>RF00255;mir-218;ABRQ01081918.1/2024-2119 9813:Procavia capensis
(cape rock hyrax)
Length = 96
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ttgtgcttgatctaaccatgtggt 24
||||||||||||||||||||||||
Sbjct: 18 ttgtgcttgatctaaccatgtggt 41
>RF00255;mir-218;AADN02035923.1/118816-118721 9031:Gallus gallus
(chicken)
Length = 96
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ttgtgcttgatctaaccatgtggt 24
||||||||||||||||||||||||
Sbjct: 18 ttgtgcttgatctaaccatgtggt 41
>RF00255;mir-218;CAAB01001792.1/26731-26830 31033:Takifugu
rubripes
Length = 100
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 ttgtgcttgatctaaccatgtggttgcc 28
||||||||||||||||||||||| ||||
Sbjct: 18 ttgtgcttgatctaaccatgtggctgcc 45
>RF00255;mir-218;ABRO01284271.1/1059-1152 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 94
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ttgtgcttgatctaaccatgtgg 23
|||||||||||||||||||||||
Sbjct: 18 ttgtgcttgatctaaccatgtgg 40
>RF00255;mir-218;CAAB01001870.1/27610-27514 31033:Takifugu
rubripes
Length = 97
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ttgtgcttgatctaaccatgtgg 23
|||||||||||||||||||||||
Sbjct: 18 ttgtgcttgatctaaccatgtgg 40
>RF00255;mir-218;AANH01008177.1/992-1091 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 100
Score = 46.1 bits (23), Expect = 5e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 36 agtaaaacatggttccgtcaagcacca 62
||||||||||||||| |||||||||||
Sbjct: 56 agtaaaacatggttctgtcaagcacca 82
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 ttgtgcttgatctaaccatgtg 22
||||||||||||||||||||||
Sbjct: 18 ttgtgcttgatctaaccatgtg 39
>RF00255;mir-218;BAAF04054903.1/5141-5043 8090:Oryzias latipes
(Japanese medaka)
Length = 99
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ttgtgcttgatctaaccatgtgg 23
|||||||||||||||||||||||
Sbjct: 18 ttgtgcttgatctaaccatgtgg 40
>RF00255;mir-218;BX323583.36/54354-54450 7955:Danio rerio
(zebrafish)
Length = 97
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 ttgtgcttgatctaaccatgtg 22
||||||||||||||||||||||
Sbjct: 18 ttgtgcttgatctaaccatgtg 39
Score = 42.1 bits (21), Expect = 7e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 42 acatggttccgtcaagcacca 62
|||||||||||||||||||||
Sbjct: 60 acatggttccgtcaagcacca 80
