miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00251;mir-219;ABRO01040016.1/7191-7262 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 72
Score = 127 bits (64), Expect = 2e-29
Identities = 70/72 (97%)
Strand = Plus / Plus
Query: 9 gctcttgattgtccaaacgcaattctcgagtctctggctccggccgagagttgagtctgg 68
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 1 gctcttgattgtccaaacgcaattctcgagtctatggctccggccgagagttgggtctgg 60
Query: 69 acgtcccgagcc 80
||||||||||||
Sbjct: 61 acgtcccgagcc 72
>RF00251;mir-219;AAFR03043752.1/856-788 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 69
Score = 52.0 bits (26), Expect = 1e-06
Identities = 61/72 (84%), Gaps = 3/72 (4%)
Strand = Plus / Plus
Query: 9 gctcttgattgtccaaacgcaattctcgagtctctggctccggccgagagttgagtctgg 68
|||| ||||||||||||||||||||||| | ||| ||| | ||||||||| ||||||
Sbjct: 1 gctcctgattgtccaaacgcaattctcgtggctccggccc---tcgagagttgggtctgg 57
Query: 69 acgtcccgagcc 80
|| |||||||||
Sbjct: 58 acatcccgagcc 69
>RF00251;mir-219;AADN02026640.1/6422-6348 9031:Gallus gallus
(chicken)
Length = 75
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 9 gctcttgattgtccaaacgcaattct 34
|||| |||||||||||||||||||||
Sbjct: 1 gctcctgattgtccaaacgcaattct 26
>RF00251;mir-219;BX323065.6/59875-59803 7955:Danio rerio
(zebrafish)
Length = 73
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 ttgattgtccaaacgcaattct 34
||||||||||||||||||||||
Sbjct: 5 ttgattgtccaaacgcaattct 26
>RF00251;mir-219;BX088597.18/18564-18638 7955:Danio rerio
(zebrafish)
Length = 75
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 ttgattgtccaaacgcaattct 34
||||||||||||||||||||||
Sbjct: 5 ttgattgtccaaacgcaattct 26
>RF00251;mir-219;AJ506968.1/8189-8258 31033:Takifugu rubripes
Length = 70
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 ttgattgtccaaacgcaattct 34
||||||||||||||||||||||
Sbjct: 5 ttgattgtccaaacgcaattct 26
>RF00251;mir-219;AANH01001091.1/47038-46966 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 73
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 ttgattgtccaaacgcaattct 34
||||||||||||||||||||||
Sbjct: 5 ttgattgtccaaacgcaattct 26
>RF00251;mir-219;BAAF04001368.1/1865-1938 8090:Oryzias latipes
(Japanese medaka)
Length = 74
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 ttgattgtccaaacgcaattct 34
||||||||||||||||||||||
Sbjct: 5 ttgattgtccaaacgcaattct 26
>RF00251;mir-219;BAAE01251032.1/4888-4958 8090:Oryzias latipes
(Japanese medaka)
Length = 71
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 ttgattgtccaaacgcaattct 34
||||||||||||||||||||||
Sbjct: 5 ttgattgtccaaacgcaattct 26
>RF00251;mir-219;BAAE01000431.1/3148-3074 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 14 tgattgtccaaacgcaattctcgagt 39
||||||||||||||||||||| ||||
Sbjct: 6 tgattgtccaaacgcaattcttgagt 31
>RF00251;mir-219;BAAE01153842.1/2224-2151 8090:Oryzias latipes
(Japanese medaka)
Length = 74
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 ttgattgtccaaacgcaattct 34
||||||||||||||||||||||
Sbjct: 5 ttgattgtccaaacgcaattct 26
>RF00251;mir-219;AAZO01005883.1/1118-1050 121224:Pediculus humanus
corporis (human body louse)
Length = 69
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 ttgattgtccaaacgcaattct 34
||||||||||||||||||||||
Sbjct: 5 ttgattgtccaaacgcaattct 26
