miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00756;mir-299;AAGU02503119.1/1549-1611 9785:Loxodonta africana
(African savanna elephant)
Length = 63
Score = 109 bits (55), Expect = 4e-24
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 1 aagaaatggtttaccgtcccacatacattttgagtatgtatgtgggatggtaaaccgctt 60
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct: 1 aagaaatggtttaccgtcccacatacattttgaatatgtatgtgggatggtaaaccactt 60
Query: 61 ctt 63
|||
Sbjct: 61 ctt 63
Score = 56.0 bits (28), Expect = 5e-08
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 1 aagaaatggtttaccgtcccacatacattttgagtatgtatgtgggatggtaaacc 56
||||| ||||||||| |||||||||||| || | |||||||||||| ||||||||
Sbjct: 63 aagaagtggtttaccatcccacatacatattcaaaatgtatgtgggacggtaaacc 8
>RF00756;mir-299;ABDC01257670.1/1456-1394 30608:Microcebus murinus
(gray mouse lemur)
Length = 63
Score = 93.7 bits (47), Expect = 2e-19
Identities = 59/63 (93%)
Strand = Plus / Minus
Query: 1 aagaaatggtttaccgtcccacatacattttgagtatgtatgtgggatggtaaaccgctt 60
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 63 aagaaatggtttaccgtcccacatacattttctatatgtatgtgggacggtaaaccgctt 4
Query: 61 ctt 63
|||
Sbjct: 3 ctt 1
Score = 58.0 bits (29), Expect = 1e-08
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 8 ggtttaccgtcccacatacattttgagtatgtatgtgggatggtaaacc 56
||||||||||||||||||||| | || |||||||||||| ||||||||
Sbjct: 8 ggtttaccgtcccacatacatatagaaaatgtatgtgggacggtaaacc 56
>RF00756;mir-299;CAAA01169866.1/64-2 10090:Mus musculus (house
mouse)
Length = 63
Score = 79.8 bits (40), Expect = 3e-15
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 1 aagaaatggtttaccgtcccacatacattttgagtatgtatgtgggatggtaaaccgctt 60
||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||
Sbjct: 1 aagaaatggtttaccgtcccacatacattttgagtattgttgtgggacggtgaaccgctt 60
>RF00756;mir-299;AAIY01428934.1/3553-3616 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 64
Score = 73.8 bits (37), Expect = 2e-13
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 11 ttaccgtcccacatacattttgagtatgtatgtgggatggtaaaccgcttctt 63
||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 12 ttaccgtcccacatacattttagatgtgtatgtgggatggtaaaccgcttctt 64
