miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00668;mir-302;AACN010299228.1/1232-1301 9615:Canis lupus
familiaris (dog)
Length = 70
Score = 107 bits (54), Expect = 2e-23
Identities = 66/70 (94%)
Strand = Plus / Plus
Query: 6 ctttaactttaacatggacgtgctttctgtgacttgcaaaatagtaagtgcttccatgtt 65
|||||||||||||||||| || |||||| |||||| ||||||||||||||||||||||||
Sbjct: 1 ctttaactttaacatggaagtactttctttgactttcaaaatagtaagtgcttccatgtt 60
Query: 66 ttagtagaag 75
||||||||||
Sbjct: 61 ttagtagaag 70
>RF00668;mir-302;AADN02009328.1/23605-23673 9031:Gallus gallus
(chicken)
Length = 69
Score = 71.9 bits (36), Expect = 1e-12
Identities = 61/68 (89%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 6 ctttaactttaacatggacgtgctttctgtgacttgcaaaatagtaagtgcttccatgtt 65
|||| ||||||||||||| ||||||||||||| || ||| ||||||||||||||||||
Sbjct: 1 cttttactttaacatggaggtgctttctgtgattttacaaa-agtaagtgcttccatgtt 59
Query: 66 ttagtaga 73
||||||||
Sbjct: 60 ttagtaga 67
>RF00668;mir-302;AAGW01417911.1/808-881 9986:Oryctolagus cuniculus
(rabbit)
Length = 74
Score = 65.9 bits (33), Expect = 7e-11
Identities = 61/70 (87%), Gaps = 4/70 (5%)
Strand = Plus / Plus
Query: 10 aactttaacatggacgtgctttctgtgacttgc----aaaatagtaagtgcttccatgtt 65
|||||||||||||| |||||||||||||||| | ||| ||||||||||||||||||
Sbjct: 5 aactttaacatggaggtgctttctgtgactttcgttagaaaaagtaagtgcttccatgtt 64
Query: 66 ttagtagaag 75
||||| ||||
Sbjct: 65 ttagtcgaag 74
>RF00668;mir-302;AANN01821362.1/2593-2523 9365:Erinaceus europaeus
(western European hedgehog)
Length = 71
Score = 60.0 bits (30), Expect = 4e-09
Identities = 58/66 (87%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 6 ctttaactttaacatggacgtgctttctgtgacttgcaaa-atagtaagtgcttccatgt 64
|||||||||||| |||| ||||||||||||| | ||| |||||||||||||||||||
Sbjct: 1 ctttaactttaatgtggaagtgctttctgtgattctaaaatatagtaagtgcttccatgt 60
Query: 65 tttagt 70
||||||
Sbjct: 61 tttagt 66
>RF00668;mir-302;ABRT010177693.1/1091-1020 9478:Tarsius syrichta
(Philippine tarsier)
Length = 72
Score = 58.0 bits (29), Expect = 2e-08
Identities = 59/68 (86%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 10 aactttaacatggacgtgctttctgtgacttgca--aaatagtaagtgcttccatgtttt 67
||||| |||||||| ||||||||||||| || ||| ||||||||||||||||||||
Sbjct: 5 aacttaaacatggaggtgctttctgtgattttttttaaagagtaagtgcttccatgtttt 64
Query: 68 agtagaag 75
||||||||
Sbjct: 65 agtagaag 72
>RF00668;mir-302;AC113952.9/51530-51463 10090:Mus musculus (house
mouse)
Length = 68
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 48 agtaagtgcttccatgttttagtagaag 75
||||||||||||||||||||||||||||
Sbjct: 41 agtaagtgcttccatgttttagtagaag 68
>RF00668;mir-302;ABRO01269686.1/11784-11711 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 74
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 48 agtaagtgcttccatgttttagtagaag 75
||||||||||||||||||||||||||||
Sbjct: 47 agtaagtgcttccatgttttagtagaag 74
>RF00668;mir-302;AAKN02038884.1/104612-104543 10141:Cavia
porcellus (domestic guinea pig)
Length = 70
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 48 agtaagtgcttccatgttttagtagaag 75
||||||||||||||||||||||||||||
Sbjct: 43 agtaagtgcttccatgttttagtagaag 70
>RF00668;mir-302;AAYZ01300380.1/1601-1528 9978:Ochotona princeps
(American pika)
Length = 74
Score = 56.0 bits (28), Expect = 6e-08
Identities = 61/70 (87%), Gaps = 4/70 (5%)
Strand = Plus / Plus
Query: 10 aactttaacatggacgtgctttctgtgactt--gc--aaaatagtaagtgcttccatgtt 65
|||||||||||||| ||||||||| ||| || || |||| ||||||||||||||||||
Sbjct: 5 aactttaacatggaggtgctttctttgatttctgctaaaaaaagtaagtgcttccatgtt 64
Query: 66 ttagtagaag 75
||||| ||||
Sbjct: 65 ttagtcgaag 74
>RF00668;mir-302;ABRQ01753171.1/907-976 9813:Procavia capensis
(cape rock hyrax)
Length = 70
Score = 52.0 bits (26), Expect = 1e-06
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 6 ctttaactttaacatggacgtgctttctgtgacttgcaaaatagtaagtgcttccatgtt 65
|||| ||||||||| ||| || ||||||| |||| ||| ||||||||||||| ||||
Sbjct: 1 ctttgactttaacaaggaggtcctttctgctacttttgaaaaagtaagtgcttccttgtt 60
Query: 66 ttagtagaag 75
||||||||||
Sbjct: 61 ttagtagaag 70
>RF00668;mir-302;AALT01320989.1/607-537 42254:Sorex araneus
(European shrew)
Length = 71
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 48 agtaagtgcttccatgttttagtagaag 75
||||||||||||||||||| ||||||||
Sbjct: 44 agtaagtgcttccatgtttgagtagaag 71
>RF00668;mir-302;AAPY01419152.1/185-114 37347:Tupaia belangeri
(northern tree shrew)
Length = 72
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 48 agtaagtgcttccatgttttagtagaag 75
||||||||||||||||||||||| ||||
Sbjct: 45 agtaagtgcttccatgttttagtggaag 72
>RF00668;mir-302;ABRQ01753171.1/1212-1280 9813:Procavia capensis
(cape rock hyrax)
Length = 69
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 43 aaaatagtaagtgcttccatgttttagt 70
|||| |||||||||||||||||||||||
Sbjct: 37 aaaaaagtaagtgcttccatgttttagt 64
>RF00668;mir-302;AAPN01081641.1/13571-13636 9258:Ornithorhynchus
anatinus (platypus)
Length = 66
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 48 agtaagtgcttccatgttttagt 70
|||||||||||||||||||||||
Sbjct: 39 agtaagtgcttccatgttttagt 61
>RF00668;mir-302;AAFR03016534.1/30625-30693 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 69
Score = 46.1 bits (23), Expect = 6e-05
Identities = 48/55 (87%), Gaps = 1/55 (1%)
Strand = Plus / Plus
Query: 12 ctttaacatggacgtgctttctgtgacttgcaaaatagtaagtgcttccatgttt 66
|||||||||||| |||||| |||||| || |||| | |||||||||||||||||
Sbjct: 7 ctttaacatggaagtgcttgctgtga-ttttaaaaaattaagtgcttccatgttt 60
>RF00668;mir-302;ABRP01199153.1/3701-3634 132908:Pteropus vampyrus
(large flying fox)
Length = 68
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 48 agtaagtgcttccatgttttagt 70
|||||||||||||||||||||||
Sbjct: 42 agtaagtgcttccatgttttagt 64
>RF00668;mir-302;ABQF01043812.1/11235-11302 59729:Taeniopygia
guttata
Length = 68
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 48 agtaagtgcttccatgttttagt 70
|||||||||||||||||||||||
Sbjct: 41 agtaagtgcttccatgttttagt 63
>RF00668;mir-302;AADN02009328.1/24503-24571 9031:Gallus gallus
(chicken)
Length = 69
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 48 agtaagtgcttccatgttttagt 70
|||||||||||||||||||||||
Sbjct: 42 agtaagtgcttccatgttttagt 64
>RF00668;mir-302;AALT01320989.1/195-127 42254:Sorex araneus
(European shrew)
Length = 69
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 50 taagtgcttccatgttttagt 70
|||||||||||||||||||||
Sbjct: 45 taagtgcttccatgttttagt 65
>RF00668;mir-302;AANN01821362.1/2160-2092 9365:Erinaceus europaeus
(western European hedgehog)
Length = 69
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 50 taagtgcttccatgttttagt 70
|||||||||||||||||||||
Sbjct: 44 taagtgcttccatgttttagt 64
>RF00668;mir-302;ABRR01131093.1/749-681 30538:Lama pacos (alpaca)
Length = 69
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 43 aaaatagtaagtgcttccatgtttt 67
|||| ||||||||||||||||||||
Sbjct: 37 aaaaaagtaagtgcttccatgtttt 61
>RF00668;mir-302;ABRR01146281.1/7793-7724 30538:Lama pacos
(alpaca)
Length = 70
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 50 taagtgcttccatgttttagt 70
|||||||||||||||||||||
Sbjct: 46 taagtgcttccatgttttagt 66
>RF00668;mir-302;AAIY01685397.1/7598-7532 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 67
Score = 42.1 bits (21), Expect = 0.001
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 43 aaaatagtaagtgcttccatgttttagta 71
|||| ||||||||||||| ||||||||||
Sbjct: 35 aaaaaagtaagtgcttccttgttttagta 63
