miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00951;mir-1302;ABDC01203092.1/8237-8186 30608:Microcebus
murinus (gray mouse lemur)
Length = 52
Score = 71.9 bits (36), Expect = 2e-12
Identities = 48/52 (92%)
Strand = Plus / Plus
Query: 28 tttttagtgtaagtatgtcttatgcaatatttgggacatacttatgctaaaa 79
||||||||||||||||||| ||| | |||||||||||||||||||||||||
Sbjct: 1 tttttagtgtaagtatgtcccatgtactatttgggacatacttatgctaaaa 52
>RF00951;mir-1302;AAGU02007008.1/4896-4947 9785:Loxodonta africana
(African savanna elephant)
Length = 52
Score = 71.9 bits (36), Expect = 2e-12
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 28 tttttagtgtaagtatgtcttatgcaatatttgggacatactta 71
||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 1 tttttagtgtaagtatgtcctatgcaatatttggggcatactta 44
>RF00951;mir-1302;AAWR02002278.1/2146-2197 9796:Equus caballus
(horse)
Length = 52
Score = 60.0 bits (30), Expect = 6e-09
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 37 taagtatgtcttatgcaatatttgggacatacttatgctaaa 78
|||||||||| |||||||||||||||||||||||| |||||
Sbjct: 10 taagtatgtcccatgcaatatttgggacatacttatactaaa 51
>RF00951;mir-1302;ABBA01055362.1/41683-41734 9606:Homo sapiens
(human)
Length = 52
Score = 58.0 bits (29), Expect = 2e-08
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 28 tttttagtgtaagtatgtcttatgcaatatttgggacatacttatgcta 76
||||||| |||||||||| |||||||||| |||||||||||||||||
Sbjct: 1 tttttagcataagtatgtcccatgcaatattcgggacatacttatgcta 49
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 59 tgggacatacttatgctaaaaa 80
||||||||||||||||||||||
Sbjct: 22 tgggacatacttatgctaaaaa 1
>RF00951;mir-1302;ABRN01321684.1/762-711 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 52
Score = 56.0 bits (28), Expect = 9e-08
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 28 tttttagtgtaagtatgtcttatgcaatatttgggacatacttatgctaaaa 79
||||||| ||||||||||| |||||| ||||| ||||||||||| ||||||
Sbjct: 1 tttttagcataagtatgtctcatgcaacatttgagacatacttatactaaaa 52
>RF00951;mir-1302;ABSL01065451.1/42819-42768 9606:Homo sapiens
(human)
Length = 52
Score = 56.0 bits (28), Expect = 9e-08
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 28 tttttagtgtaagtatgtcttatgcaatatttgggacatacttatgct 75
|||||||| |||||||||| |||||| |||||||||||||||||||
Sbjct: 1 tttttagtataagtatgtcccatgcaacctttgggacatacttatgct 48
>RF00951;mir-1302;CABD01581572.1/347-296 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 52
Score = 56.0 bits (28), Expect = 9e-08
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 28 tttttagtgtaagtatgtcttatgcaatatttgggacatacttatgctaaaa 79
|||||||| ||||||| || |||| |||||||||| |||||||||||||||
Sbjct: 1 tttttagtataagtatatcccatgccatatttgggatatacttatgctaaaa 52
>RF00951;mir-1302;ABRQ01257097.1/9096-9147 9813:Procavia capensis
(cape rock hyrax)
Length = 52
Score = 56.0 bits (28), Expect = 9e-08
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 28 tttttagtgtaagtatgtcttatgcaatatttgggacatacttatgctaaaa 79
|||||||| ||||||| | |||||||||||||||||||||||| ||||||
Sbjct: 1 tttttagtacaagtatgccccatgcaatatttgggacatacttatactaaaa 52
>RF00951;mir-1302;ABVD01188517.1/7377-7428 9358:Choloepus
hoffmanni (Hoffmann's two-fingered sloth)
Length = 52
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 49 atgcaatatttgggacatacttatgctaaaa 79
|||||||||||||||||||||||| ||||||
Sbjct: 22 atgcaatatttgggacatacttatactaaaa 52
>RF00951;mir-1302;ABRN01375792.1/2900-2951 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 52
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 53 aatatttgggacatacttatgctaaaa 79
|||||||||||||||||||||||||||
Sbjct: 26 aatatttgggacatacttatgctaaaa 52
>RF00951;mir-1302;CABD01607770.2/408-357 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 52
Score = 54.0 bits (27), Expect = 4e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 37 taagtatgtcttatgcaatatttgggacatacttatgctaaaa 79
|||||||||| ||||| |||||||||||||||||| ||||||
Sbjct: 10 taagtatgtcccatgcagtatttgggacatacttatactaaaa 52
>RF00951;mir-1302;ABRR01359120.1/1625-1676 30538:Lama pacos
(alpaca)
Length = 52
Score = 52.0 bits (26), Expect = 1e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 37 taagtatgtcttatgcaatatttgggacatacttatgctaaa 78
|||||||||| |||||||||||||||||| ||||| |||||
Sbjct: 10 taagtatgtcccatgcaatatttgggacatgcttatactaaa 51
>RF00951;mir-1302;ABVD01095402.1/1483-1534 9358:Choloepus
hoffmanni (Hoffmann's two-fingered sloth)
Length = 52
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 49 atgcaatatttgggacatacttatgctaaaa 79
|||||||||| ||||||||||||| ||||||
Sbjct: 22 atgcaatattagggacatacttattctaaaa 52
>RF00951;mir-1302;ACBE01215844.1/4538-4487 9685:Felis catus
(domestic cat)
Length = 52
Score = 46.1 bits (23), Expect = 9e-05
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 37 taagtatgtcttatgcaatatttgggacatacttatgctaaaa 79
|||||||||| ||||||||| ||||||||||||| ||||||
Sbjct: 10 taagtatgtcccgtgcaatattggggacatacttatcctaaaa 52
>RF00951;mir-1302;AAEX02034265.1/150833-150884 9615:Canis lupus
familiaris (dog)
Length = 52
Score = 46.1 bits (23), Expect = 9e-05
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 29 ttttagtgtaagtatgtcttatgcaatatttgggacatacttatgctaaaa 79
||||||| |||||||||| ||| ||| || ||||||||||||| ||||||
Sbjct: 2 ttttagtataagtatgtcccatgtaatgttggggacatacttatactaaaa 52
>RF00951;mir-1302;ABRT010531408.1/1405-1456 9478:Tarsius syrichta
(Philippine tarsier)
Length = 52
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 49 atgcaatatttgggacatacttatgctaaaa 79
||||||||||||||||||||| || ||||||
Sbjct: 22 atgcaatatttgggacatactcatactaaaa 52
