miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;AC148816.3/87512-87332 3880:Medicago truncatula
           (barrel medic)
          Length = 181

 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 84  tgatctcggaccaggcttcattcctcacacc 114
           |||||||||||||||||||||||||||||||
Sbjct: 151 tgatctcggaccaggcttcattcctcacacc 181




>RF00075;mir-166;AC235255.1/12904-12739 3847:Glycine max (soybean)
          Length = 166

 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 84  tgatctcggaccaggcttcattcctcacacc 114
           |||||||||||||||||||||||||||||||
Sbjct: 136 tgatctcggaccaggcttcattcctcacacc 166



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 4  ggtgtatggaatgaagtttgatccaagatc 33
          ||||| |||||||| |||||||||||||||
Sbjct: 1  ggtgtttggaatgaggtttgatccaagatc 30




>RF00075;mir-166;AP008218.1/18370254-18370388 39947:Oryza sativa
           Japonica Group
          Length = 135

 Score = 60.0 bits (30), Expect = 7e-09
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 85  gatctcggaccaggcttcattcctcacacc 114
           ||||||||||||||||||||||||||||||
Sbjct: 106 gatctcggaccaggcttcattcctcacacc 135




>RF00075;mir-166;CAAP02007291.1/14711-14590 29760:Vitis vinifera
          Length = 122

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 83  ttgatctcggaccaggcttcattcctcacacc 114
           |||||||||||||||||||||||||| |||||
Sbjct: 91  ttgatctcggaccaggcttcattcctgacacc 122



 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                               
Query: 4  ggtgtatggaatgaagtttgatccaagatccctcctt 40
          ||||| |||||||| |||||||||||||||| |||||
Sbjct: 1  ggtgtttggaatgaggtttgatccaagatccttcctt 37




>RF00075;mir-166;ABXC01005455.1/25016-25131 4558:Sorghum bicolor
           (sorghum)
          Length = 116

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 87  tctcggaccaggcttcattcctcacacc 114
           ||||||||||||||||||||||||||||
Sbjct: 89  tctcggaccaggcttcattcctcacacc 116




>RF00075;mir-166;DQ908436.1/479-591 3635:Gossypium hirsutum (upland
           cotton)
          Length = 113

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 85  gatctcggaccaggcttcattcctcac 111
           |||||||||||||||||||||||||||
Sbjct: 84  gatctcggaccaggcttcattcctcac 110



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 4  ggtgtatggaatgaagtttgatccaagatcc 34
          |||||| |||||||||||||||||| |||||
Sbjct: 1  ggtgtaaggaatgaagtttgatccacgatcc 31




>RF00075;mir-166;AARH01005662.1/95261-95577 3694:Populus
          trichocarpa
          Length = 317

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 4  ggtgtatggaatgaagtttgatccaagatcc 34
          ||||| |||||||||||||||||||||||||
Sbjct: 1  ggtgtttggaatgaagtttgatccaagatcc 31



 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 84  tgatctcggaccaggcttcattcctcacacc 114
           ||||||||||||||||||||||||| |||||
Sbjct: 287 tgatctcggaccaggcttcattccttacacc 317




>RF00075;mir-166;AARH01007982.1/90633-90310 3694:Populus
          trichocarpa
          Length = 324

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 4  ggtgtatggaatgaagtttgatccaagatcc 34
          ||||| |||||||||||||||||||||||||
Sbjct: 1  ggtgtttggaatgaagtttgatccaagatcc 31



 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 84  tgatctcggaccaggcttcattcctcacacc 114
           ||||||||||||||||||||||||| |||||
Sbjct: 294 tgatctcggaccaggcttcattccttacacc 324




>RF00075;mir-166;AC138001.2/40361-40495 39947:Oryza sativa Japonica
           Group
          Length = 135

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 85  gatctcggaccaggcttcattcctcacacc 114
           ||||||||| ||||||||||||||||||||
Sbjct: 106 gatctcggatcaggcttcattcctcacacc 135



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 4  ggtgtatggaatgaagtttgatccaagatc 33
          ||||| ||||||| ||||||||||||||||
Sbjct: 1  ggtgtttggaatgcagtttgatccaagatc 30




>RF00075;mir-166;ABIM01018276.1/2199-2062 3649:Carica papaya
           (papaya)
          Length = 138

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 83  ttgatctcggaccaggcttcattcc 107
           |||||||||||||||||||||||||
Sbjct: 107 ttgatctcggaccaggcttcattcc 131




>RF00075;mir-166;ABXC01002952.1/108749-108653 4558:Sorghum bicolor
           (sorghum)
          Length = 97

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 83  ttgatctcggaccaggcttcattcc 107
           |||||||||||||||||||||||||
Sbjct: 66  ttgatctcggaccaggcttcattcc 90




>RF00075;mir-166;ABIM01012777.1/4514-4390 3649:Carica papaya
           (papaya)
          Length = 125

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 84  tgatctcggaccaggcttcattcc 107
           ||||||||||||||||||||||||
Sbjct: 95  tgatctcggaccaggcttcattcc 118




>RF00075;mir-166;AARH01003608.1/24010-23917 3694:Populus trichocarpa
          Length = 94

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 84  tgatctcggaccaggcttcattcc 107
           ||||||||||||||||||||||||
Sbjct: 64  tgatctcggaccaggcttcattcc 87




>RF00075;mir-166;AARH01004299.1/36070-36161 3694:Populus trichocarpa
          Length = 92

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 84  tgatctcggaccaggcttcattcc 107
           ||||||||||||||||||||||||
Sbjct: 62  tgatctcggaccaggcttcattcc 85




>RF00075;mir-166;AASG02003618.1/9737-9830 3988:Ricinus communis
           (castor bean)
          Length = 94

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 84  tgatctcggaccaggcttcattcc 107
           ||||||||||||||||||||||||
Sbjct: 64  tgatctcggaccaggcttcattcc 87




>RF00075;mir-166;AC148487.14/34671-34762 3880:Medicago truncatula
           (barrel medic)
          Length = 92

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 84  tgatctcggaccaggcttcattcc 107
           ||||||||||||||||||||||||
Sbjct: 62  tgatctcggaccaggcttcattcc 85




>RF00075;mir-166;AM448542.2/4591-4502 29760:Vitis vinifera
          Length = 90

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 84  tgatctcggaccaggcttcattcc 107
           ||||||||||||||||||||||||
Sbjct: 60  tgatctcggaccaggcttcattcc 83




>RF00075;mir-166;AP008208.1/26148565-26148667 39947:Oryza sativa
           Japonica Group
          Length = 103

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 84  tgatctcggaccaggcttcattcc 107
           ||||||||||||||||||||||||
Sbjct: 73  tgatctcggaccaggcttcattcc 96




>RF00075;mir-166;AC155889.2/42101-41932 3880:Medicago truncatula
           (barrel medic)
          Length = 170

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 86  atctcggaccaggcttcattcct 108
           |||||||||||||||||||||||
Sbjct: 142 atctcggaccaggcttcattcct 164




>RF00075;mir-166;CT009488.4/103389-103285 3880:Medicago truncatula
           (barrel medic)
          Length = 105

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 87  tctcggaccaggcttcattcctc 109
           |||||||||||||||||||||||
Sbjct: 78  tctcggaccaggcttcattcctc 100




>RF00075;mir-166;AC226041.1/11826-11708 4641:Musa acuminata
          Length = 119

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 85  gatctcggaccaggcttcattcc 107
           |||||||||||||||||||||||
Sbjct: 90  gatctcggaccaggcttcattcc 112




>RF00075;mir-166;FJ010939.2/353-450 52838:Musa balbisiana
          Length = 98

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 83  ttgatctcggaccaggcttcattcctc 109
           |||| ||||||||||||||||||||||
Sbjct: 67  ttgaactcggaccaggcttcattcctc 93




>RF00075;mir-166;EU945393.1/89-202 4577:Zea mays
          Length = 114

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 85  gatctcggaccaggcttcattcc 107
           |||||||||||||||||||||||
Sbjct: 85  gatctcggaccaggcttcattcc 107




>RF00075;mir-166;AY664417.1/307265-307178 4577:Zea mays
          Length = 88

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 87  tctcggaccaggcttcattcctc 109
           |||||||||||||||||||||||
Sbjct: 61  tctcggaccaggcttcattcctc 83




>RF00075;mir-166;EU956093.1/113-209 4577:Zea mays
          Length = 97

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 85  gatctcggaccaggcttcattcc 107
           |||||||||||||||||||||||
Sbjct: 68  gatctcggaccaggcttcattcc 90




>RF00075;mir-166;AY501432.1/1-122 4577:Zea mays
          Length = 122

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 85  gatctcggaccaggcttcattcc 107
           |||||||||||||||||||||||
Sbjct: 95  gatctcggaccaggcttcattcc 117




>RF00075;mir-166;AY501431.1/1-212 4577:Zea mays
          Length = 212

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 85  gatctcggaccaggcttcattcc 107
           |||||||||||||||||||||||
Sbjct: 185 gatctcggaccaggcttcattcc 207




>RF00075;mir-166;ABXC01000193.1/181030-180913 4558:Sorghum bicolor
           (sorghum)
          Length = 118

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 85  gatctcggaccaggcttcattcc 107
           |||||||||||||||||||||||
Sbjct: 89  gatctcggaccaggcttcattcc 111




>RF00075;mir-166;ABXC01006910.1/39676-39486 4558:Sorghum bicolor
           (sorghum)
          Length = 191

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 85  gatctcggaccaggcttcattcc 107
           |||||||||||||||||||||||
Sbjct: 162 gatctcggaccaggcttcattcc 184




>RF00075;mir-166;AK251614.1/146-305 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 160

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 85  gatctcggaccaggcttcattcc 107
           |||||||||||||||||||||||
Sbjct: 131 gatctcggaccaggcttcattcc 153




>RF00075;mir-166;AAAA02020902.1/104196-104017 39946:Oryza sativa
           Indica Group
          Length = 180

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 85  gatctcggaccaggcttcattcc 107
           |||||||||||||||||||||||
Sbjct: 151 gatctcggaccaggcttcattcc 173




>RF00075;mir-166;AP003614.2/6887-6709 39947:Oryza sativa Japonica
           Group
          Length = 179

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 85  gatctcggaccaggcttcattcc 107
           |||||||||||||||||||||||
Sbjct: 150 gatctcggaccaggcttcattcc 172




>RF00075;mir-166;AAAA02030332.1/11899-12019 39946:Oryza sativa
           Indica Group
          Length = 121

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 85  gatctcggaccaggcttcattcc 107
           |||||||||||||||||||||||
Sbjct: 92  gatctcggaccaggcttcattcc 114




>RF00075;mir-166;AARH01003279.1/141842-141699 3694:Populus
           trichocarpa
          Length = 144

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 87  tctcggaccaggcttcattcct 108
           ||||||||||||||||||||||
Sbjct: 117 tctcggaccaggcttcattcct 138




>RF00075;mir-166;AC140029.19/70482-70585 3880:Medicago truncatula
           (barrel medic)
          Length = 104

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 86  atctcggaccaggcttcattcc 107
           ||||||||||||||||||||||
Sbjct: 76  atctcggaccaggcttcattcc 97