miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00452;mir-172;AASG02011039.1/5310-5468 3988:Ricinus communis
           (castor bean)
          Length = 159

 Score = 93.7 bits (47), Expect = 9e-19
 Identities = 47/47 (100%)
 Strand = Plus / Minus

                                                          
Query: 144 accgtgcatttgcatgtgaatcttgatgatgctacacccgcaaacaa 190
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47  accgtgcatttgcatgtgaatcttgatgatgctacacccgcaaacaa 1



 Score = 67.9 bits (34), Expect = 5e-11
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                 
Query: 22  tttattgccgatgcagcatcatcaagattctcactttc 59
           |||||||| |||||||||||||||||||||||||||||
Sbjct: 159 tttattgctgatgcagcatcatcaagattctcactttc 122




>RF00452;mir-172;CAAP02003282.1/14594-14705 29760:Vitis vinifera
          Length = 112

 Score = 85.7 bits (43), Expect = 2e-16
 Identities = 49/51 (96%)
 Strand = Plus / Minus

                                                              
Query: 140 caccaccgtgcatttgcatgtgaatcttgatgatgctacacccgcaaacaa 190
           ||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 51  caccaccgtgcatttgcatgtgaatcttgatgatgctacatgcgcaaacaa 1



 Score = 65.9 bits (33), Expect = 2e-10
 Identities = 33/33 (100%)
 Strand = Plus / Minus

                                            
Query: 22  tttattgccgatgcagcatcatcaagattctca 54
           |||||||||||||||||||||||||||||||||
Sbjct: 112 tttattgccgatgcagcatcatcaagattctca 80




>RF00452;mir-172;AARH01003915.1/155600-155740 3694:Populus
           trichocarpa
          Length = 141

 Score = 83.8 bits (42), Expect = 9e-16
 Identities = 45/46 (97%)
 Strand = Plus / Minus

                                                         
Query: 145 ccgtgcatttgcatgtgaatcttgatgatgctacacccgcaaacaa 190
           |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 46  ccgtgcatttgcatgtgaatcttgatgatgctccacccgcaaacaa 1



 Score = 81.8 bits (41), Expect = 4e-15
 Identities = 51/53 (96%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                
Query: 22  tttattgccgatgcagcatcatcaagattctcactttccaaacaactttggca 74
           |||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 141 tttattgccgatgcagcatcatcaagattctcac-ttccaaagaactttggca 90




>RF00452;mir-172;AC182714.2/88903-88742 3694:Populus trichocarpa
          Length = 162

 Score = 81.8 bits (41), Expect = 4e-15
 Identities = 51/53 (96%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                
Query: 22  tttattgccgatgcagcatcatcaagattctcactttccaaacaactttggca 74
           |||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 162 tttattgccgatgcagcatcatcaagattctcac-ttccaaagaactttggca 111



 Score = 61.9 bits (31), Expect = 3e-09
 Identities = 40/43 (93%)
 Strand = Plus / Minus

                                                      
Query: 148 tgcatttgcatgtgaatcttgatgatgctacacccgcaaacaa 190
           ||||||||||||||||||||| ||||||  |||||||||||||
Sbjct: 43  tgcatttgcatgtgaatcttggtgatgcagcacccgcaaacaa 1




>RF00452;mir-172;AM457961.2/1662-1782 29760:Vitis vinifera
          Length = 121

 Score = 69.9 bits (35), Expect = 1e-11
 Identities = 38/39 (97%)
 Strand = Plus / Minus

                                                  
Query: 152 tttgcatgtgaatcttgatgatgctacacccgcaaacaa 190
           |||||||||||||||||||||||||||||| ||||||||
Sbjct: 39  tttgcatgtgaatcttgatgatgctacacctgcaaacaa 1



 Score = 61.9 bits (31), Expect = 3e-09
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                          
Query: 24  tattgccgatgcagcatcatcaagattctca 54
           |||||||||||||||||||||||||||||||
Sbjct: 119 tattgccgatgcagcatcatcaagattctca 89




>RF00452;mir-172;ABIM01030483.1/4658-4870 3649:Carica papaya
           (papaya)
          Length = 213

 Score = 67.9 bits (34), Expect = 5e-11
 Identities = 47/50 (94%), Gaps = 1/50 (2%)
 Strand = Plus / Minus

                                                             
Query: 139 ccaccaccgt-gcatttgcatgtgaatcttgatgatgctacacccgcaaa 187
           |||||||||| | |||||||||||||||||||||||||||||||| ||||
Sbjct: 53  ccaccaccgttggatttgcatgtgaatcttgatgatgctacacccacaaa 4



 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 46/50 (92%), Gaps = 1/50 (2%)
 Strand = Plus / Minus

                                                             
Query: 24  tattgccgatgcagcatcatcaagattctcactttccaaacaactttggc 73
           ||||| ||||||||||||||||||||||||||| | |||| |||||||||
Sbjct: 211 tattgtcgatgcagcatcatcaagattctcactct-caaagaactttggc 163




>RF00452;mir-172;CAAP02000586.1/29172-29291 29760:Vitis vinifera
          Length = 120

 Score = 63.9 bits (32), Expect = 8e-10
 Identities = 35/36 (97%)
 Strand = Plus / Minus

                                               
Query: 155 gcatgtgaatcttgatgatgctacacccgcaaacaa 190
           ||||||||||||||||||||||||||| ||||||||
Sbjct: 36  gcatgtgaatcttgatgatgctacacctgcaaacaa 1



 Score = 61.9 bits (31), Expect = 3e-09
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                          
Query: 24  tattgccgatgcagcatcatcaagattctca 54
           |||||||||||||||||||||||||||||||
Sbjct: 118 tattgccgatgcagcatcatcaagattctca 88




>RF00452;mir-172;FM163855.1/191-306 3702:Arabidopsis thaliana (thale
           cress)
          Length = 116

 Score = 61.9 bits (31), Expect = 3e-09
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                              
Query: 25  attgccgatgcagcatcatcaagattctcactttc 59
           |||||||||||||||||||||||||||||| ||||
Sbjct: 113 attgccgatgcagcatcatcaagattctcattttc 79




>RF00452;mir-172;BABK01027900.1/1116-1276 34305:Lotus japonicus
          Length = 161

 Score = 61.9 bits (31), Expect = 3e-09
 Identities = 40/43 (93%)
 Strand = Plus / Minus

                                                      
Query: 148 tgcatttgcatgtgaatcttgatgatgctacacccgcaaacaa 190
           |||||||||||||||||||||||| ||||||| | ||||||||
Sbjct: 43  tgcatttgcatgtgaatcttgatggtgctacatcagcaaacaa 1



 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                               
Query: 22  tttattgccgatgcagcatcatcaagattctcactt 57
           ||||| ||| ||||||||||||||||||||||||||
Sbjct: 161 tttatggccaatgcagcatcatcaagattctcactt 126




>RF00452;mir-172;ABIM01012229.1/3274-3102 3649:Carica papaya
           (papaya)
          Length = 173

 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                 
Query: 22  tttattgccgatgcagcatcatcaagattctcactttc 59
           ||||| ||||||||||||||||||||||||||| ||||
Sbjct: 173 tttatggccgatgcagcatcatcaagattctcattttc 136




>RF00452;mir-172;BABK01107385.1/174-85 34305:Lotus japonicus
          Length = 90

 Score = 58.0 bits (29), Expect = 5e-08
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                           
Query: 22 tttattgccgatgcagcatcatcaagattctca 54
          |||||||| ||||||||||||||||||||||||
Sbjct: 90 tttattgctgatgcagcatcatcaagattctca 58




>RF00452;mir-172;AARH01003539.1/168033-168162 3694:Populus
           trichocarpa
          Length = 130

 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                   
Query: 151 atttgcatgtgaatcttgatgatgctacacccgcaaacaa 190
           ||||| |||||||||||||||||||| |||| ||||||||
Sbjct: 40  atttgaatgtgaatcttgatgatgctgcacctgcaaacaa 1



 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                             
Query: 22  tttattgccgatgcagcatcatcaagattctcac 55
           ||||| || |||||||||||||||||||||||||
Sbjct: 130 tttatggctgatgcagcatcatcaagattctcac 97




>RF00452;mir-172;AARH01004415.1/120029-119901 3694:Populus
           trichocarpa
          Length = 129

 Score = 54.0 bits (27), Expect = 8e-07
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                  
Query: 152 tttgcatgtgaatcttgatgatgctacacccgcaaacaa 190
           |||| |||||||||||||||||||| |||| ||||||||
Sbjct: 39  tttgaatgtgaatcttgatgatgctgcacctgcaaacaa 1



 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                             
Query: 22  tttattgccgatgcagcatcatcaagattctcac 55
           ||||| || |||||||||||||||||||||||||
Sbjct: 129 tttatggctgatgcagcatcatcaagattctcac 96




>RF00452;mir-172;AASG02049897.1/697-856 3988:Ricinus communis
           (castor bean)
          Length = 160

 Score = 54.0 bits (27), Expect = 8e-07
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                  
Query: 152 tttgcatgtgaatcttgatgatgctacacccgcaaacaa 190
           ||||||||||||||||| ||||||| |||| ||||||||
Sbjct: 39  tttgcatgtgaatcttggtgatgctgcacctgcaaacaa 1



 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 31  gatgcagcatcatcaagattctcac 55
           |||||||||||||||||||||||||
Sbjct: 151 gatgcagcatcatcaagattctcac 127




>RF00452;mir-172;ABIM01001078.1/716-916 3649:Carica papaya (papaya)
          Length = 201

 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                         
Query: 22  tttattgccgatgcagcatcatcaagattc 51
           |||||||||| |||||||||||||||||||
Sbjct: 201 tttattgccgctgcagcatcatcaagattc 172



 Score = 48.1 bits (24), Expect = 5e-05
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 158 tgtgaatcttgatgatgctacacccgcaaaca 189
           ||||||||||||||||||| || |||||||||
Sbjct: 33  tgtgaatcttgatgatgctccatccgcaaaca 2




>RF00452;mir-172;EU549232.1/232-344 3702:Arabidopsis thaliana (thale
           cress)
          Length = 113

 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                         
Query: 25  attgccgatgcagcatcatcaagattctca 54
           ||||||| ||||||||||||||||||||||
Sbjct: 110 attgccgctgcagcatcatcaagattctca 81




>RF00452;mir-172;AARH01004394.1/257332-257189 3694:Populus
           trichocarpa
          Length = 144

 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                         
Query: 22  tttattgccgatgcagcatcatcaagattc 51
           |||||||||| |||||||||||||||||||
Sbjct: 144 tttattgccgctgcagcatcatcaagattc 115




>RF00452;mir-172;AARH01003860.1/86743-86610 3694:Populus trichocarpa
          Length = 134

 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 26  ttgccgatgcagcatcatcaagattc 51
           ||||||||||||||||||||||||||
Sbjct: 130 ttgccgatgcagcatcatcaagattc 105




>RF00452;mir-172;AARH01000428.1/33766-33584 3694:Populus trichocarpa
          Length = 183

 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 26  ttgccgatgcagcatcatcaagattc 51
           ||||||||||||||||||||||||||
Sbjct: 179 ttgccgatgcagcatcatcaagattc 154




>RF00452;mir-172;AASG02005670.1/14724-14879 3988:Ricinus communis
           (castor bean)
          Length = 156

 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                         
Query: 22  tttattgccgatgcagcatcatcaagattc 51
           |||||||||| |||||||||||||||||||
Sbjct: 156 tttattgccgctgcagcatcatcaagattc 127




>RF00452;mir-172;AM481129.2/11694-11833 29760:Vitis vinifera
          Length = 140

 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                         
Query: 22  tttattgccgatgcagcatcatcaagattc 51
           |||||||||| |||||||||||||||||||
Sbjct: 140 tttattgccgctgcagcatcatcaagattc 111



 Score = 48.1 bits (24), Expect = 5e-05
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 158 tgtgaatcttgatgatgctacacccgcaaaca 189
           ||||||||||||||||||| || |||||||||
Sbjct: 33  tgtgaatcttgatgatgctccatccgcaaaca 2




>RF00452;mir-172;AASG02019478.1/457-599 3988:Ricinus communis
           (castor bean)
          Length = 143

 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 26  ttgccgatgcagcatcatcaagattctca 54
           |||| ||||||||||||||||||||||||
Sbjct: 139 ttgctgatgcagcatcatcaagattctca 111




>RF00452;mir-172;BABK01012763.1/1927-2053 34305:Lotus japonicus
          Length = 127

 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 158 tgtgaatcttgatgatgctacacccgcaaacaa 190
           ||||||||||||||||||| |||| ||||||||
Sbjct: 33  tgtgaatcttgatgatgctccaccagcaaacaa 1



 Score = 44.1 bits (22), Expect = 8e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 33  tgcagcatcatcaagattctca 54
           ||||||||||||||||||||||
Sbjct: 121 tgcagcatcatcaagattctca 100




>RF00452;mir-172;BABK01039752.1/451-284 34305:Lotus japonicus
          Length = 168

 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 26  ttgccgatgcagcatcatcaagattctca 54
           |||| ||||||||||||||||||||||||
Sbjct: 164 ttgctgatgcagcatcatcaagattctca 136




>RF00452;mir-172;ABXC01006306.1/12162-12041 4558:Sorghum bicolor
           (sorghum)
          Length = 122

 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 26  ttgccgatgcagcatcatcaagattctca 54
           |||| ||||||||||||||||||||||||
Sbjct: 118 ttgctgatgcagcatcatcaagattctca 90



 Score = 44.1 bits (22), Expect = 8e-04
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 157 atgtgaatcttgatgatgctacacccgcaa 186
           |||||||||||||||||||| |||| ||||
Sbjct: 34  atgtgaatcttgatgatgctgcacctgcaa 5




>RF00452;mir-172;AP006162.2/95640-95748 39947:Oryza sativa Japonica
           Group
          Length = 109

 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 157 atgtgaatcttgatgatgctacacccgcaaaca 189
           ||||||||||||||||||| || ||||||||||
Sbjct: 34  atgtgaatcttgatgatgccacgcccgcaaaca 2



 Score = 48.1 bits (24), Expect = 5e-05
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 31  gatgcagcatcatcaagattctca 54
           ||||||||||||||||||||||||
Sbjct: 100 gatgcagcatcatcaagattctca 77




>RF00452;mir-172;EU869069.1/352-463 39946:Oryza sativa Indica Group
          Length = 112

 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 26  ttgccgatgcagcatcatcaagattctca 54
           |||| ||||||||||||||||||||||||
Sbjct: 108 ttgctgatgcagcatcatcaagattctca 80




>RF00452;mir-172;AC189388.2/19492-19378 51351:Brassica rapa subsp.
           pekinensis
          Length = 115

 Score = 48.1 bits (24), Expect = 5e-05
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 31  gatgcagcatcatcaagattctca 54
           ||||||||||||||||||||||||
Sbjct: 106 gatgcagcatcatcaagattctca 83




>RF00452;mir-172;FM163882.1/53-161 3702:Arabidopsis thaliana (thale
           cress)
          Length = 109

 Score = 48.1 bits (24), Expect = 5e-05
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 31  gatgcagcatcatcaagattctca 54
           ||||||||||||||||||||||||
Sbjct: 100 gatgcagcatcatcaagattctca 77




>RF00452;mir-172;EU945504.1/992-1139 4577:Zea mays
          Length = 148

 Score = 48.1 bits (24), Expect = 5e-05
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 31  gatgcagcatcatcaagattctca 54
           ||||||||||||||||||||||||
Sbjct: 139 gatgcagcatcatcaagattctca 116




>RF00452;mir-172;ABXC01002997.1/14893-14755 4558:Sorghum bicolor
           (sorghum)
          Length = 139

 Score = 48.1 bits (24), Expect = 5e-05
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 31  gatgcagcatcatcaagattctca 54
           ||||||||||||||||||||||||
Sbjct: 130 gatgcagcatcatcaagattctca 107




>RF00452;mir-172;ABXC01001026.1/165015-165125 4558:Sorghum bicolor
           (sorghum)
          Length = 111

 Score = 48.1 bits (24), Expect = 5e-05
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 158 tgtgaatcttgatgatgctacacccgcaaaca 189
           |||||||||||||||||| || ||||||||||
Sbjct: 33  tgtgaatcttgatgatgccacgcccgcaaaca 2



 Score = 48.1 bits (24), Expect = 5e-05
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 31  gatgcagcatcatcaagattctca 54
           ||||||||||||||||||||||||
Sbjct: 102 gatgcagcatcatcaagattctca 79




>RF00452;mir-172;EU549250.1/242-366 3702:Arabidopsis thaliana (thale
           cress)
          Length = 125

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 26  ttgccgatgcagcatcatcaagattctcact 56
           |||| ||||||||||||||||||||| ||||
Sbjct: 121 ttgctgatgcagcatcatcaagattcccact 91




>RF00452;mir-172;CAAP02002084.1/47016-46906 29760:Vitis vinifera
          Length = 111

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 32  atgcagcatcatcaagattctca 54
           |||||||||||||||||||||||
Sbjct: 101 atgcagcatcatcaagattctca 79




>RF00452;mir-172;AP003298.3/17210-16973 39947:Oryza sativa Japonica
           Group
          Length = 238

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 29  ccgatgcagcatcatcaagattc 51
           |||||||||||||||||||||||
Sbjct: 231 ccgatgcagcatcatcaagattc 209




>RF00452;mir-172;AC189648.2/24074-23978 51351:Brassica rapa subsp.
          pekinensis
          Length = 97

 Score = 44.1 bits (22), Expect = 8e-04
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                    
Query: 26 ttgccgatgcagcatcatcaagattc 51
          |||| |||||||||||||||||||||
Sbjct: 93 ttgctgatgcagcatcatcaagattc 68




>RF00452;mir-172;EU549227.1/243-121 3702:Arabidopsis thaliana (thale
           cress)
          Length = 123

 Score = 44.1 bits (22), Expect = 8e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 33  tgcagcatcatcaagattctca 54
           ||||||||||||||||||||||
Sbjct: 112 tgcagcatcatcaagattctca 91