miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;CU302344.1/39855-39991 3880:Medicago truncatula
(barrel medic)
Length = 137
Score = 95.6 bits (48), Expect = 2e-19
Identities = 93/108 (86%)
Strand = Plus / Minus
Query: 24 tcccaaaatataagcaaaaaggggtcaacaaaagtgaatgtatttggactaaattttaaa 83
||||||||| |||||||||| ||||||||| |||| | ||||| ||| ||||||||||
Sbjct: 122 tcccaaaatgtaagcaaaaatgggtcaacataagttagtgtatctggtacaaattttaaa 63
Query: 84 ccaaattcatcaactttcgttgaccactttttgcttatattttgggac 131
|||||| ||| |||||| ||||||| |||||||||| ||||||||||
Sbjct: 62 ccaaatacattaactttttttgaccaatttttgcttacattttgggac 15
Score = 63.9 bits (32), Expect = 6e-10
Identities = 89/108 (82%)
Strand = Plus / Plus
Query: 23 gtcccaaaatataagcaaaaaggggtcaacaaaagtgaatgtatttggactaaattttaa 82
|||||||||| |||||||||| |||||| |||||| ||||||||||| |||| |||
Sbjct: 15 gtcccaaaatgtaagcaaaaattggtcaaaaaaagttaatgtatttggtttaaaatttgt 74
Query: 83 accaaattcatcaactttcgttgaccactttttgcttatattttggga 130
|||| || || ||||| ||||||| |||||||||| |||||||||
Sbjct: 75 accagatacactaacttatgttgacccatttttgcttacattttggga 122
>RF00906;MIR1122;CR954190.2/110040-110176 3880:Medicago truncatula
(barrel medic)
Length = 137
Score = 89.7 bits (45), Expect = 1e-17
Identities = 105/125 (84%)
Strand = Plus / Minus
Query: 17 ccctctgtcccaaaatataagcaaaaaggggtcaacaaaagtgaatgtatttggactaaa 76
||||| |||||||||| |||||||||| ||||||||||||| ||||||||||| |||
Sbjct: 129 ccctccgtcccaaaatgtaagcaaaaattggtcaacaaaagttaatgtatttggttcaaa 70
Query: 77 ttttaaaccaaattcatcaactttcgttgaccactttttgcttatattttgggacagaga 136
|||| ||| |||||||||||| ||| ||| |||||||||| |||||||||| |||
Sbjct: 69 atttatgccacattcatcaacttatgttaacccatttttgcttacattttgggacggagg 10
Query: 137 gagta 141
|||||
Sbjct: 9 gagta 5
>RF00906;MIR1122;AC161407.5/87285-87421 3880:Medicago truncatula
(barrel medic)
Length = 137
Score = 83.8 bits (42), Expect = 6e-16
Identities = 99/118 (83%)
Strand = Plus / Plus
Query: 24 tcccaaaatataagcaaaaaggggtcaacaaaagtgaatgtatttggactaaattttaaa 83
|||||||||||||||||||| ||||||||||||| ||||||||||| ||| ||| |
Sbjct: 16 tcccaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttcaaaatttgta 75
Query: 84 ccaaattcatcaactttcgttgaccactttttgcttatattttgggacagagagagta 141
|| || ||||||||| |||||||| | |||||||| |||||||||| ||| |||||
Sbjct: 76 tcagatgcatcaacttatgttgaccaatctttgcttacattttgggacggagggagta 133
Score = 75.8 bits (38), Expect = 2e-13
Identities = 95/114 (83%)
Strand = Plus / Minus
Query: 17 ccctctgtcccaaaatataagcaaaaaggggtcaacaaaagtgaatgtatttggactaaa 76
||||| |||||||||| |||||||| | |||||||| |||| ||| || || |||
Sbjct: 129 ccctccgtcccaaaatgtaagcaaagattggtcaacataagttgatgcatctgatacaaa 70
Query: 77 ttttaaaccaaattcatcaactttcgttgaccactttttgcttatattttggga 130
|||| |||||||| ||| |||||| |||||||| ||||||||||||||||||||
Sbjct: 69 ttttgaaccaaatacattaacttttgttgaccaatttttgcttatattttggga 16
>RF00906;MIR1122;AC165446.16/119089-118951 3880:Medicago truncatula
(barrel medic)
Length = 139
Score = 77.8 bits (39), Expect = 4e-14
Identities = 57/63 (90%)
Strand = Plus / Minus
Query: 46 ggtcaacaaaagtgaatgtatttggactaaattttaaaccaaattcatcaactttcgttg 105
|||||||||||||||||||||||||||| |||||| ||| |||| |||||| ||| ||||
Sbjct: 101 ggtcaacaaaagtgaatgtatttggactgaatttttaactaaatacatcaatttttgttg 42
Query: 106 acc 108
|||
Sbjct: 41 acc 39
>RF00906;MIR1122;AC157349.7/77890-78028 3880:Medicago truncatula
(barrel medic)
Length = 139
Score = 77.8 bits (39), Expect = 4e-14
Identities = 57/63 (90%)
Strand = Plus / Minus
Query: 46 ggtcaacaaaagtgaatgtatttggactaaattttaaaccaaattcatcaactttcgttg 105
|||||||||||||||||||||||||||| |||||| ||| | || |||||||||| ||||
Sbjct: 101 ggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttg 42
Query: 106 acc 108
|||
Sbjct: 41 acc 39
>RF00906;MIR1122;AC146972.54/71829-71691 3880:Medicago truncatula
(barrel medic)
Length = 139
Score = 69.9 bits (35), Expect = 1e-11
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 46 ggtcaacaaaagtgaatgtatttggactaaattttaaaccaaattcatcaactttcgttg 105
||||||||||||||||||||||||||| |||||| ||| | || |||||||||| ||||
Sbjct: 39 ggtcaacaaaagtgaatgtatttggacagaatttttaactagatacatcaacttttgttg 98
Query: 106 acc 108
|||
Sbjct: 99 acc 101
>RF00906;MIR1122;AC191599.4/36848-36986 3880:Medicago truncatula
(barrel medic)
Length = 139
Score = 65.9 bits (33), Expect = 2e-10
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 46 ggtcaacaaaagtgaatgtatttggactaaattttaaaccaaattcatcaactttcgttg 105
||||||||||| |||||||||||||||| |||||| ||| | || |||||||||| ||||
Sbjct: 39 ggtcaacaaaaatgaatgtatttggactgaatttttaactagatacatcaacttttgttg 98
Query: 106 a 106
|
Sbjct: 99 a 99
>RF00906;MIR1122;CT863712.2/34686-34549 3880:Medicago truncatula
(barrel medic)
Length = 138
Score = 56.0 bits (28), Expect = 1e-07
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 46 ggtcaacaaaagtgaatgtatttggactaaattttaaaccaaattcatcaactttcgttg 105
|||||| ||||||||||||||||||||| |||||| ||| | || |||||| ||| ||||
Sbjct: 39 ggtcaataaaagtgaatgtatttggactgaatttttaactagatacatcaatttttgttg 98
>RF00906;MIR1122;AC147498.15/3925-4071 3880:Medicago truncatula
(barrel medic)
Length = 147
Score = 50.1 bits (25), Expect = 9e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 112 ttttgcttatattttgggacagagagagtaata 144
|||||||||||||||| ||||||| ||||||||
Sbjct: 114 ttttgcttatattttgagacagagggagtaata 146
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 17 ccctctgtcccaaaatataagcaaaa 42
||||||||| ||||||||||||||||
Sbjct: 139 ccctctgtctcaaaatataagcaaaa 114
>RF00906;MIR1122;CU576539.1/45273-45134 3880:Medicago truncatula
(barrel medic)
Length = 140
Score = 48.1 bits (24), Expect = 4e-05
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 53 aaaagtgaatgtatttggactaaattttaaaccaaattcatcaacttt 100
|||||||||||||| |||||| |||||| ||| | || ||||||||||
Sbjct: 47 aaaagtgaatgtatgtggactgaatttttaactagatacatcaacttt 94
>RF00906;MIR1122;AACV01013579.1/19751-19640 39947:Oryza sativa
Japonica Group
Length = 112
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 115 tgcttatattttgggacagagagagtaa 142
||||||||||||||||||||| ||||||
Sbjct: 31 tgcttatattttgggacagagggagtaa 4
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 ccctctgtcccaaaatataagca 39
|||||||||||||||||||||||
Sbjct: 9 ccctctgtcccaaaatataagca 31
>RF00906;MIR1122;AP008207.1/29270032-29270129 39947:Oryza sativa
Japonica Group
Length = 98
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 118 ttatattttgggacagagagagta 141
||||||||||||||||||||||||
Sbjct: 28 ttatattttgggacagagagagta 5
>RF00906;MIR1122;AAAA02031697.1/13340-13228 39946:Oryza sativa
Indica Group
Length = 113
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 119 tatattttgggacagagagagta 141
|||||||||||||||||||||||
Sbjct: 27 tatattttgggacagagagagta 5
>RF00906;MIR1122;AAAA02007751.1/21104-20995 39946:Oryza sativa
Indica Group
Length = 110
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 115 tgcttatattttgggacagagagagta 141
||||||||||||||||| |||||||||
Sbjct: 31 tgcttatattttgggacggagagagta 5
>RF00906;MIR1122;AP008214.1/27846174-27846285 39947:Oryza sativa
Japonica Group
Length = 112
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 115 tgcttatattttgggacagagagagta 141
||||||||||||||||||||| |||||
Sbjct: 31 tgcttatattttgggacagagggagta 5
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 ccctctgtcccaaaatataagca 39
|||||||||||||||||||||||
Sbjct: 9 ccctctgtcccaaaatataagca 31
>RF00906;MIR1122;AP008210.1/24813715-24813809 39947:Oryza sativa
Japonica Group
Length = 95
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 115 tgcttatattttgggacagagagagta 141
||||||||||||||||| |||||||||
Sbjct: 31 tgcttatattttgggacggagagagta 5
>RF00906;MIR1122;AC150978.15/4652-4771 3880:Medicago truncatula
(barrel medic)
Length = 120
Score = 44.1 bits (22), Expect = 6e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 112 ttttgcttatattttgggacagagagagtaatat 145
|||||||||||||||| ||| ||| |||||||||
Sbjct: 87 ttttgcttatattttgagacggagggagtaatat 120
>RF00906;MIR1122;AC120987.2/63054-63157 39947:Oryza sativa
Japonica Group
Length = 104
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 cctctgtcccaaaatataagca 39
||||||||||||||||||||||
Sbjct: 10 cctctgtcccaaaatataagca 31
