miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;AAQR01020418.1/249-164 30611:Otolemur garnettii
(small-eared galago)
Length = 86
Score = 151 bits (76), Expect = 2e-36
Identities = 83/84 (98%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 1 cggggtgaggtagtaggttgtgtggtttcaggg-cagtgatgttgcccctcagaagataa 59
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 2 cggggtgaggtagtaggttgtgtggtttcaggggcagtgatgttgcccctcagaagataa 61
Query: 60 ctatacaacctactgccttccctg 83
||||||||||||||||||||||||
Sbjct: 62 ctatacaacctactgccttccctg 85
>RF00027;let-7;AAGW01230269.1/1770-1854 9986:Oryctolagus cuniculus
(rabbit)
Length = 85
Score = 121 bits (61), Expect = 1e-27
Identities = 76/81 (93%)
Strand = Plus / Plus
Query: 1 cggggtgaggtagtaggttgtgtggtttcagggcagtgatgttgcccctcagaagataac 60
|||||||||||||||||||||||||||||||||||| | ||| ||||||||| |||||||
Sbjct: 2 cggggtgaggtagtaggttgtgtggtttcagggcagcggtgtcgcccctcagcagataac 61
Query: 61 tatacaacctactgccttccc 81
|||||| ||||||||||||||
Sbjct: 62 tatacagcctactgccttccc 82
>RF00027;let-7;AAPN01341034.1/3404-3318 9258:Ornithorhynchus
anatinus (platypus)
Length = 87
Score = 115 bits (58), Expect = 9e-26
Identities = 79/85 (92%), Gaps = 2/85 (2%)
Strand = Plus / Plus
Query: 1 cggggtgaggtagtaggttgtgtggtttcagggcagtgatgttgcccc--tcagaagata 58
|||| |||||||||||||||||||||||||||| |||||| ||||||| ||||||||||
Sbjct: 2 cgggatgaggtagtaggttgtgtggtttcaggggagtgattttgccccaatcagaagata 61
Query: 59 actatacaacctactgccttccctg 83
|||||||| ||||||||||||||||
Sbjct: 62 actatacagcctactgccttccctg 86
>RF00027;let-7;AAPY01023439.1/425-342 37347:Tupaia belangeri
(northern tree shrew)
Length = 84
Score = 107 bits (54), Expect = 2e-23
Identities = 73/78 (93%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 1 cggggtgaggtagtaggttgtgtggtttcagggcagtgatgttgcccctcagaagataac 60
||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||
Sbjct: 2 cggggtgaggtagtaggtt-tgtggtttcagggcagtgatgttgcccctcagcaaataac 60
Query: 61 tatacaacctactgcctt 78
|| |||||||||| ||||
Sbjct: 61 tacacaacctacttcctt 78
>RF00027;let-7;AANH01001398.1/49056-49141 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 86
Score = 107 bits (54), Expect = 2e-23
Identities = 76/82 (92%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 3 gggtgaggtagtaggttgtgtggtttcagggcagtgatgttgccc-ctcagaagataact 61
||||||||||||||||||||||||||| ||| |||||| |||||| |||||||||||||
Sbjct: 4 gggtgaggtagtaggttgtgtggtttcggggtagtgattttgcccgatcagaagataact 63
Query: 62 atacaacctactgccttccctg 83
||||||| ||||||||||||||
Sbjct: 64 atacaacatactgccttccctg 85
>RF00027;let-7;AAWZ01027397.1/1152-1066 28377:Anolis carolinensis
(green anole)
Length = 87
Score = 103 bits (52), Expect = 3e-22
Identities = 73/79 (92%), Gaps = 2/79 (2%)
Strand = Plus / Plus
Query: 4 ggtgaggtagtaggttgtgtggtttcagggcagtgatgttgcccc--tcagaagataact 61
|||||||||||||||||||||||||||||| ||| || ||||||| |||| ||||||||
Sbjct: 5 ggtgaggtagtaggttgtgtggtttcagggtagtcattttgccccaatcaggagataact 64
Query: 62 atacaacctactgccttcc 80
|||||||||||||||||||
Sbjct: 65 atacaacctactgccttcc 83
>RF00027;let-7;AAVX01031590.1/1741-1655 7868:Callorhinchus milii
(ghost shark)
Length = 87
Score = 97.6 bits (49), Expect = 2e-20
Identities = 75/81 (92%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 5 gtgaggtagtaggttgtgtggtttcagggcagtgatgtt-gcccc-tcagaagataacta 62
||||||||||||||||||| ||||||||| |||||| || ||||| |||| |||||||||
Sbjct: 6 gtgaggtagtaggttgtgtagtttcagggtagtgatttttgccccatcaggagataacta 65
Query: 63 tacaacctactgccttccctg 83
|||||||||||||||||||||
Sbjct: 66 tacaacctactgccttccctg 86
>RF00027;let-7;BAAE01218263.1/598-683 8090:Oryzias latipes
(Japanese medaka)
Length = 86
Score = 91.7 bits (46), Expect = 1e-18
Identities = 74/82 (90%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 3 gggtgaggtagtaggttgtgtggtttcagggcagtgatgttgcccc-tcagaagataact 61
||||||||||||||||||||||||||||||| ||||| || |||| | || || |||||
Sbjct: 4 gggtgaggtagtaggttgtgtggtttcagggttgtgattttaccccataaggagctaact 63
Query: 62 atacaacctactgccttccctg 83
||||||||||||||||||||||
Sbjct: 64 atacaacctactgccttccctg 85
>RF00027;let-7;AAVX01008163.1/128-212 7868:Callorhinchus milii
(ghost shark)
Length = 85
Score = 65.9 bits (33), Expect = 7e-11
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 7 gaggtagtaggttgtgtggtttcagggcagtgatgttgcccctcagaagataactataca 66
|||||||||||||| | |||| ||||||| ||| ||||||| || |||||||||||||
Sbjct: 8 gaggtagtaggttgcatagtttgagggcagggattttgccccaaaggagataactataca 67
Query: 67 acctactgccttccctg 83
|||| ||||||| ||||
Sbjct: 68 acctgctgcctttcctg 84
>RF00027;let-7;AAGU02300353.1/1892-1804 9785:Loxodonta africana
(African savanna elephant)
Length = 89
Score = 50.1 bits (25), Expect = 4e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 51 agaagataactatacaacctactgccttccctg 83
||||||||||||||||||||||| | |||||||
Sbjct: 56 agaagataactatacaacctactactttccctg 88
>RF00027;let-7;ABRQ01114151.1/10843-10755 9813:Procavia capensis
(cape rock hyrax)
Length = 89
Score = 50.1 bits (25), Expect = 4e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 51 agaagataactatacaacctactgccttccctg 83
||||||||||||||||||||||| | |||||||
Sbjct: 56 agaagataactatacaacctactactttccctg 88
>RF00027;let-7;BAAF04002393.1/17587-17677 8090:Oryzias latipes
(Japanese medaka)
Length = 91
Score = 50.1 bits (25), Expect = 4e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 48 ctcagaagataactatacaacctactgccttcc 80
||||| ||||||||||||||| |||||||||||
Sbjct: 55 ctcaggagataactatacaacttactgccttcc 87
>RF00027;let-7;CAAB01000053.1/115251-115164 31033:Takifugu
rubripes
Length = 88
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 49 tcagaagataactatacaacctactgccttcc 80
|||| ||||||||||||||| |||||||||||
Sbjct: 53 tcaggagataactatacaacttactgccttcc 84
>RF00027;let-7;AANH01006181.1/186306-186220 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 52 gaagataactatacaacctactgccttccctg 83
|||||||||||||||| ||| |||||||||||
Sbjct: 55 gaagataactatacaatctattgccttccctg 86
>RF00027;let-7;AADN02013953.1/13719-13633 9031:Gallus gallus
(chicken)
Length = 87
Score = 46.1 bits (23), Expect = 7e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 49 tcagaagataactatacaacctactgccttccctg 83
|||| |||||||||||||| ||| |||||||||||
Sbjct: 52 tcaggagataactatacaatctattgccttccctg 86
>RF00027;let-7;AAPN01191849.1/6200-6287 9258:Ornithorhynchus
anatinus (platypus)
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 54 agataactatacaacctactgccttccctg 83
|||||||||||||| ||| |||||||||||
Sbjct: 58 agataactatacaatctattgccttccctg 87
