miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;BAAF04093499.1/4339-4264 8090:Oryzias latipes
(Japanese medaka)
Length = 76
Score = 143 bits (72), Expect = 4e-34
Identities = 75/76 (98%)
Strand = Plus / Plus
Query: 5 ccgggttgaggtagtaggttgtatggtttagagttacaccctgggagttaactgtacaac 64
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 ccgggttgaggtagtaggttgtatggtttagaattacaccctgggagttaactgtacaac 60
Query: 65 cttctagctttccttg 80
||||||||||||||||
Sbjct: 61 cttctagctttccttg 76
>RF00027;let-7;AAPN01238922.1/186-111 9258:Ornithorhynchus
anatinus (platypus)
Length = 76
Score = 133 bits (67), Expect = 4e-31
Identities = 73/75 (97%)
Strand = Plus / Plus
Query: 5 ccgggttgaggtagtaggttgtatggtttagagttacaccctgggagttaactgtacaac 64
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 1 ccgggttgaggtagtaggttgtatggtttagagtcacaccccgggagttaactgtacaac 60
Query: 65 cttctagctttcctt 79
|||||||||||||||
Sbjct: 61 cttctagctttcctt 75
>RF00027;let-7;AAVX01338774.1/620-544 7868:Callorhinchus milii
(ghost shark)
Length = 77
Score = 89.7 bits (45), Expect = 5e-18
Identities = 66/73 (90%)
Strand = Plus / Plus
Query: 5 ccgggttgaggtagtaggttgtatggtttagagttacaccctgggagttaactgtacaac 64
||||| |||||||||||||||||| ||||||| ||||| | ||||||||||||||||| |
Sbjct: 1 ccggggtgaggtagtaggttgtatagtttagaattacatcgtgggagttaactgtacagc 60
Query: 65 cttctagctttcc 77
|| ||||||||||
Sbjct: 61 ctcctagctttcc 73
>RF00027;let-7;AAVX01007479.1/3161-3085 7868:Callorhinchus milii
(ghost shark)
Length = 77
Score = 85.7 bits (43), Expect = 8e-17
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatggtttagagttacaccctgggagttaactgtacaaccttcta 70
|||||||||||||||||| |||||||| |||||| |||||| || ||||||||||| |||
Sbjct: 7 tgaggtagtaggttgtatagtttagagatacaccatgggagatagctgtacaacctccta 66
Query: 71 gctttcc 77
|||||||
Sbjct: 67 gctttcc 73
>RF00027;let-7;AAGU02067998.1/2847-2772 9785:Loxodonta africana
(African savanna elephant)
Length = 76
Score = 81.8 bits (41), Expect = 1e-15
Identities = 65/73 (89%)
Strand = Plus / Plus
Query: 8 ggttgaggtagtaggttgtatggtttagagttacaccctgggagttaactgtacaacctt 67
||||||||||||||||||||| ||||||| ||||| | ||||| |||||||||| |||
Sbjct: 4 ggttgaggtagtaggttgtatagtttagaattacatcaagggagataactgtacagcctc 63
Query: 68 ctagctttccttg 80
|||||||||||||
Sbjct: 64 ctagctttccttg 76
>RF00027;let-7;BX284646.4/46451-46375 7955:Danio rerio (zebrafish)
Length = 77
Score = 81.8 bits (41), Expect = 1e-15
Identities = 65/73 (89%)
Strand = Plus / Plus
Query: 6 cgggttgaggtagtaggttgtatggtttagagttacaccctgggagttaactgtacaacc 65
|||| |||||||||||||||||| ||||||||||||| | ||||| |||||||||| ||
Sbjct: 2 cgggatgaggtagtaggttgtatagtttagagttacaacacgggagataactgtacagcc 61
Query: 66 ttctagctttcct 78
| |||||||||||
Sbjct: 62 tcctagctttcct 74
>RF00027;let-7;CAAB01004143.1/18701-18777 31033:Takifugu rubripes
Length = 77
Score = 75.8 bits (38), Expect = 8e-14
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 8 ggttgaggtagtaggttgtatggtttagagttacaccctgggagttaactgtacaacctt 67
||||||||||||||||||||| ||| ||| |||||||| ||| ||||||||||||||
Sbjct: 4 ggttgaggtagtaggttgtatagttgagaattacacccccagagataactgtacaacctc 63
Query: 68 ctagctttcc 77
||||||||||
Sbjct: 64 ctagctttcc 73
>RF00027;let-7;AAWZ01007717.1/43277-43200 28377:Anolis
carolinensis (green anole)
Length = 78
Score = 67.9 bits (34), Expect = 2e-11
Identities = 62/70 (88%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 9 gttgaggtagtaggttgtatggtttagagttacaccct-gggagttaactgtacaacctt 67
|||||||||||||||||||||||||||| | ||||| | |||| |||||||||| |||
Sbjct: 5 gttgaggtagtaggttgtatggtttagaataacaccatcaggagataactgtacagcctc 64
Query: 68 ctagctttcc 77
||||||||||
Sbjct: 65 ctagctttcc 74
>RF00027;let-7;BAAE01285721.1/657-581 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 67.9 bits (34), Expect = 2e-11
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 8 ggttgaggtagtaggttgtatggtttagagttacaccctgggagttaactgtacaacctt 67
||||||||||||||||||||| ||| ||||| ||||| |||| |||||||||| |||
Sbjct: 4 ggttgaggtagtaggttgtatagttcagagtgacaccacaggagataactgtacagcctc 63
Query: 68 ctagctttcc 77
||||||||||
Sbjct: 64 ctagctttcc 73
>RF00027;let-7;BX663520.9/232739-232815 7955:Danio rerio
(zebrafish)
Length = 77
Score = 61.9 bits (31), Expect = 1e-09
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatggtttagagttacaccctgggagttaactgtacaaccttcta 70
|||||||||||||||||| ||||||| | ||| | |||| |||||||||||||| |||
Sbjct: 7 tgaggtagtaggttgtatagtttagaataacatcactggagataactgtacaacctccta 66
Query: 71 gctttcc 77
|||||||
Sbjct: 67 gctttcc 73
>RF00027;let-7;BAAE01198743.1/2195-2119 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 58.0 bits (29), Expect = 2e-08
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatggtttagagttacaccctgggagttaactgtacaaccttcta 70
||||||||| |||||||| ||| ||| | |||||| ||||| | |||||||||||| |||
Sbjct: 7 tgaggtagtgggttgtatagttgagaatgacaccccgggagatgactgtacaacctccta 66
Query: 71 gcttt 75
|||||
Sbjct: 67 gcttt 71
>RF00027;let-7;ABEP02005607.1/36672-36748 7739:Branchiostoma
floridae (Florida lancelet)
Length = 77
Score = 54.0 bits (27), Expect = 3e-07
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatggtttagagttacaccctgggagttaactgtacaaccttcta 70
|||||||||||||||||| ||| ||| |||| | | |||| ||||||| |||||| |||
Sbjct: 7 tgaggtagtaggttgtatagttgagaagtacatcattggagataactgtgcaacctgcta 66
Query: 71 gctttccttgg 81
||| |||||||
Sbjct: 67 gctctccttgg 77
>RF00027;let-7;AANH01000597.1/43752-43676 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 77
Score = 52.0 bits (26), Expect = 1e-06
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 8 ggttgaggtagtaggttgtatggtttagagttacaccctgggagttaactgtacaacctt 67
||||||||||||||||||||| ||| ||||| || || |||| | |||||||| |||
Sbjct: 4 ggttgaggtagtaggttgtatagttcagagtgacgccacaggagatgactgtacagcctc 63
Query: 68 ctagctttcc 77
||||||||||
Sbjct: 64 ctagctttcc 73
>RF00027;let-7;BAAF04118326.1/6305-6226 8090:Oryzias latipes
(Japanese medaka)
Length = 80
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 48 ggagttaactgtacaaccttctagctttcc 77
|||| |||||||||||||||||||||||||
Sbjct: 47 ggagataactgtacaaccttctagctttcc 76
>RF00027;let-7;BAAE01140498.1/764-841 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 taactgtacaaccttctagctttcc 77
|||||||||||||||||||||||||
Sbjct: 52 taactgtacaaccttctagctttcc 76
>RF00027;let-7;AAUQ01090552.1/622-543 408171:epibiont metagenome
Length = 80
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 aactgtacaaccttctagctttcc 77
||||||||||||||||||||||||
Sbjct: 52 aactgtacaaccttctagctttcc 75
>RF00027;let-7;ABEG01002465.1/18268-18339 135651:Caenorhabditis
brenneri
Length = 72
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 9 gttgaggtagtaggttgtatggtttaga 36
|||||||||||||||||||| |||||||
Sbjct: 4 gttgaggtagtaggttgtatagtttaga 31
>RF00027;let-7;AAGD02006482.1/22892-22821 31234:Caenorhabditis
remanei
Length = 72
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatggtttaga 36
|||||||||||||||||| |||||||
Sbjct: 6 tgaggtagtaggttgtatagtttaga 31
>RF00027;let-7;AC084471.1/10992-10920 6238:Caenorhabditis briggsae
Length = 73
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatggtttaga 36
|||||||||||||||||| |||||||
Sbjct: 6 tgaggtagtaggttgtatagtttaga 31
