miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;ABRQ01114152.1/454-374 9813:Procavia capensis (cape
rock hyrax)
Length = 81
Score = 147 bits (74), Expect = 3e-35
Identities = 77/78 (98%)
Strand = Plus / Plus
Query: 5 ggatgaggtagtagattgtatagttttagggtcataccccatcttggagataactataca 64
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 4 ggatgaggtagtagattgtatagttttagggttataccccatcttggagataactataca 63
Query: 65 gtctactgtctttcccac 82
||||||||||||||||||
Sbjct: 64 gtctactgtctttcccac 81
>RF00027;let-7;AAWZ01028874.1/2440-2520 28377:Anolis carolinensis
(green anole)
Length = 81
Score = 129 bits (65), Expect = 6e-30
Identities = 74/77 (96%)
Strand = Plus / Plus
Query: 3 tgggatgaggtagtagattgtatagttttagggtcataccccatcttggagataactata 62
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 2 tgggatgaggtagtagattgtatagttttagggtcatacccggtcttggagataactata 61
Query: 63 cagtctactgtctttcc 79
|| ||||||||||||||
Sbjct: 62 caatctactgtctttcc 78
>RF00027;let-7;CAAE01014729.1/11382-11302 99883:Tetraodon
nigroviridis
Length = 81
Score = 97.6 bits (49), Expect = 2e-20
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 2 gtgggatgaggtagtagattgtatagttttagggtcataccccatcttggagataactat 61
||||||||||||||||| |||||||||||| || ||| ||| |||| ||||||||||||
Sbjct: 1 gtgggatgaggtagtagtttgtatagttttgggatcacaccagatctgggagataactat 60
Query: 62 acagtctactgtctttc 78
|||||||||||||||||
Sbjct: 61 acagtctactgtctttc 77
>RF00027;let-7;BAAF04080487.1/5225-5305 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 95.6 bits (48), Expect = 8e-20
Identities = 69/76 (90%)
Strand = Plus / Plus
Query: 3 tgggatgaggtagtagattgtatagttttagggtcataccccatcttggagataactata 62
|||||||||||||||| ||||||||||||||| ||| ||| |||| |||||||||||||
Sbjct: 2 tgggatgaggtagtagtttgtatagttttaggatcacaccagatctgggagataactata 61
Query: 63 cagtctactgtctttc 78
||| ||||||||||||
Sbjct: 62 cagcctactgtctttc 77
>RF00027;let-7;AAVX01108779.1/886-806 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 95.6 bits (48), Expect = 8e-20
Identities = 69/76 (90%)
Strand = Plus / Plus
Query: 3 tgggatgaggtagtagattgtatagttttagggtcataccccatcttggagataactata 62
|||||||||||||||| ||||||||||||||||||| |||| || |||||||||||||
Sbjct: 2 tgggatgaggtagtaggttgtatagttttagggtcacacccacactgggagataactata 61
Query: 63 cagtctactgtctttc 78
|| |||||||||||||
Sbjct: 62 caatctactgtctttc 77
>RF00027;let-7;AANN01118339.1/762-680 9365:Erinaceus europaeus
(western European hedgehog)
Length = 83
Score = 79.8 bits (40), Expect = 5e-15
Identities = 72/80 (90%), Gaps = 2/80 (2%)
Strand = Plus / Plus
Query: 2 gtgggatgaggtagtagattgtatag-ttttagggtcataccc-catcttggagataact 59
||||||||||||||||| |||||||| ||||||||||| |||| | || ||||||||||
Sbjct: 1 gtgggatgaggtagtaggttgtatagtttttagggtcacacccaccactgggagataact 60
Query: 60 atacagtctactgtctttcc 79
||||| ||||||||||||||
Sbjct: 61 atacaatctactgtctttcc 80
>RF00027;let-7;AANH01006181.1/186487-186407 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 79.8 bits (40), Expect = 5e-15
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 2 gtgggatgaggtagtagattgtatagttttagggtcataccccatcttggagataactat 61
||||||||||||||||| ||||||||||||| |||||||||| || ||||||||||||
Sbjct: 1 gtgggatgaggtagtaggttgtatagttttacggtcatacccgcactgggagataactat 60
Query: 62 acagtctactgtctttccca 81
| |||||||||||||||
Sbjct: 61 taaacctactgtctttccca 80
>RF00027;let-7;CR735130.17/58450-58371 7955:Danio rerio
(zebrafish)
Length = 80
Score = 65.9 bits (33), Expect = 7e-11
Identities = 67/77 (87%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 2 gtgggatgaggtagtagattgtatagttttagggtcataccccatcttggagataactat 61
|||| |||||||||||| ||||||||||| || ||| ||| |||| ||||||||||||
Sbjct: 1 gtggaatgaggtagtagtttgtatagtttg-ggatcacaccagatctgggagataactat 59
Query: 62 acagtctactgtctttc 78
|||| ||||||||||||
Sbjct: 60 acagcctactgtctttc 76
>RF00027;let-7;AAVX01586337.1/294-214 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 65.9 bits (33), Expect = 7e-11
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 3 tgggatgaggtagtagattgtatagttttagggtcataccccatcttggagataactata 62
|||||||||||||||| ||||||||||||||||| | |||| | |||||||||||
Sbjct: 2 tgggatgaggtagtaggttgtatagttttagggttacacccttccggtcagataactata 61
Query: 63 cagtctactgtctttcc 79
|| ||||||||||||||
Sbjct: 62 caatctactgtctttcc 78
>RF00027;let-7;AAFR03057393.1/5692-5610 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 83
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 51 gagataactatacagtctactgtctttccc 80
||||||||||||||||||||||||||||||
Sbjct: 52 gagataactatacagtctactgtctttccc 81
>RF00027;let-7;CAAB01006742.1/7725-7806 31033:Takifugu rubripes
Length = 82
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 51 gagataactatacagtctactgtctttcc 79
|||||||||||||||||||||||||||||
Sbjct: 51 gagataactatacagtctactgtctttcc 79
>RF00027;let-7;BAAF04050050.1/5012-4932 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 58.0 bits (29), Expect = 2e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 3 tgggatgaggtagtagattgtatagttttagggtcat 39
|||| ||||||||||| ||||||||||||||||||||
Sbjct: 2 tggggtgaggtagtaggttgtatagttttagggtcat 38
>RF00027;let-7;BAAF04096587.1/14346-14265 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 51 gagataactatacagtctactgtctttcc 79
|||||||||||||||||||||||||||||
Sbjct: 51 gagataactatacagtctactgtctttcc 79
>RF00027;let-7;AAPY01663784.1/776-859 37347:Tupaia belangeri
(northern tree shrew)
Length = 84
Score = 54.0 bits (27), Expect = 3e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 5 ggatgaggtagtagattgtatagttttagggtcataccc 43
|||| |||||||||||||||||||| |||||||| ||||
Sbjct: 4 ggataaggtagtagattgtatagttctagggtcacaccc 42
>RF00027;let-7;AANH01002639.1/21280-21198 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 83
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 51 gagataactatacagtctactgtctttccca 81
|||||||||||||| ||||||||||||||||
Sbjct: 52 gagataactatacaatctactgtctttccca 82
>RF00027;let-7;AANH01006181.1/186306-186220 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 87
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 7 atgaggtagtagattgtatagttttagggt 36
||||||||||||||||||||||||| ||||
Sbjct: 6 atgaggtagtagattgtatagttttggggt 35
>RF00027;let-7;AADN02013953.1/13719-13633 9031:Gallus gallus
(chicken)
Length = 87
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 8 tgaggtagtagattgtatagttttagggt 36
|||||||||||||||||||||| ||||||
Sbjct: 7 tgaggtagtagattgtatagttgtagggt 35
>RF00027;let-7;CR936540.12/43970-44052 7955:Danio rerio
(zebrafish)
Length = 83
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 51 gagataactatacagtctactgtctttcc 79
|||||||||||||| ||||||||||||||
Sbjct: 52 gagataactatacaatctactgtctttcc 80
>RF00027;let-7;ABPM01013261.1/416-335 106582:Maylandia zebra
(zebra mbuna)
Length = 82
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 51 gagataactatacagtctactgtctttcc 79
|||||||||||||| ||||||||||||||
Sbjct: 51 gagataactatacaatctactgtctttcc 79
>RF00027;let-7;BAAE01055973.1/4881-4962 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 50.1 bits (25), Expect = 4e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 3 tgggatgaggtagtagattgtatagttttaggg 35
|||| ||||||||||| ||||||||||||||||
Sbjct: 2 tggggtgaggtagtaggttgtatagttttaggg 34
>RF00027;let-7;AAPN01191849.1/6200-6287 9258:Ornithorhynchus
anatinus (platypus)
Length = 88
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 tgaggtagtagattgtatagtttt 31
||||||||||||||||||||||||
Sbjct: 7 tgaggtagtagattgtatagtttt 30
>RF00027;let-7;CR847944.11/44347-44429 7955:Danio rerio
(zebrafish)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 51 gagataactatacagtctactgtctttc 78
|||||||||||||| |||||||||||||
Sbjct: 51 gagataactatacaatctactgtctttc 78
>RF00027;let-7;AAVX01156403.1/1100-1020 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 8 tgaggtagtagattgtatagttttagggtcataccccatcttggagataactatacagtc 67
|||||||||||||||||||||| | ||| ||| || || ||||||||||| || ||
Sbjct: 7 tgaggtagtagattgtatagttgtgaggttgtacacctcctctgagataactatgcaatc 66
Query: 68 tactgtctttcc 79
||||||||||||
Sbjct: 67 tactgtctttcc 78
>RF00027;let-7;ABRQ01826413.1/555-477 9813:Procavia capensis (cape
rock hyrax)
Length = 79
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 53 gataactatacagtctactgtctttcc 79
|||||||||||| ||||||||||||||
Sbjct: 50 gataactatacaatctactgtctttcc 76
>RF00027;let-7;BX284646.4/46451-46375 7955:Danio rerio (zebrafish)
Length = 77
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 4 gggatgaggtagtagattgtatagttt 30
||||||||||||||| |||||||||||
Sbjct: 3 gggatgaggtagtaggttgtatagttt 29
>RF00027;let-7;BAAF04002563.1/3069-3152 8090:Oryzias latipes
(Japanese medaka)
Length = 84
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 55 taactatacagtctactgtctttccca 81
|||||||||| ||||||||||||||||
Sbjct: 57 taactatacaatctactgtctttccca 83
