miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00254;mir-16;ABRQ01058087.1/3558-3638 9813:Procavia capensis
(cape rock hyrax)
Length = 81
Score = 121 bits (61), Expect = 1e-27
Identities = 76/81 (93%)
Strand = Plus / Plus
Query: 1 gttccactctagcagcacgtaaatattggcgtagtgaaatatgtattaaacaccaatatt 60
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 1 gttccactctagcagcacgtaaatattggcgtagtaaaataaatattaaacaccaatatt 60
Query: 61 actgtgctgcttcagtgtgac 81
| |||||||||| ||||||||
Sbjct: 61 attgtgctgctttagtgtgac 81
>RF00254;mir-16;AAPN01094471.1/3343-3419 9258:Ornithorhynchus
anatinus (platypus)
Length = 77
Score = 65.9 bits (33), Expect = 7e-11
Identities = 58/66 (87%), Gaps = 4/66 (6%)
Strand = Plus / Plus
Query: 7 ctctagcagcacgtaaatattggcgtagtgaaatatgtattaaacaccaatattactgtg 66
||||||||||||||||||||||| |||||||| || |||||| ||||||||| ||||
Sbjct: 7 ctctagcagcacgtaaatattggtgtagtgaa----gtcttaaaccccaatattattgtg 62
Query: 67 ctgctt 72
||||||
Sbjct: 63 ctgctt 68
>RF00254;mir-16;AADN02021066.1/63731-63651 9031:Gallus gallus
(chicken)
Length = 81
Score = 63.9 bits (32), Expect = 3e-10
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 9 ctagcagcacgtaaatattggcgtagtgaaatatgtattaaacaccaatattactgtgct 68
||||||||||||||||||||| ||||| ||||| |||||| ||||||||| ||||||
Sbjct: 9 ctagcagcacgtaaatattggtgtagtaaaataaaccttaaaccccaatattattgtgct 68
Query: 69 gctt 72
||||
Sbjct: 69 gctt 72
>RF00254;mir-16;ABQO011210750.1/1431-1352 9315:Macropus eugenii
(tammar wallaby)
Length = 80
Score = 58.0 bits (29), Expect = 2e-08
Identities = 60/69 (86%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 7 ctctagcagcacgtaaatattggcgtagtgaaatatgtattaaacaccaatattactgtg 66
|||||||||||||||||||||||||| |||| ||| | | ||| ||||||||| ||||
Sbjct: 7 ctctagcagcacgtaaatattggcgtcgtgagata-ctggtgaaccccaatattattgtg 65
Query: 67 ctgcttcag 75
|||||||||
Sbjct: 66 ctgcttcag 74
>RF00254;mir-16;AAPY01269253.1/1011-1090 37347:Tupaia belangeri
(northern tree shrew)
Length = 80
Score = 58.0 bits (29), Expect = 2e-08
Identities = 65/73 (89%), Gaps = 3/73 (4%)
Strand = Plus / Plus
Query: 1 gttccactctagcagcacgta-aatattggcgtagtgaaatatgtattaaacaccaatat 59
||||||||||||||||||||| |||| ||| | ||||||||| ||||||||||| ||||
Sbjct: 1 gttccactctagcagcacgtacaataatggggaagtgaaata-atattaaacacc-atat 58
Query: 60 tactgtgctgctt 72
|| ||||||||||
Sbjct: 59 tattgtgctgctt 71
>RF00254;mir-16;AAVX01576107.1/322-406 7868:Callorhinchus milii
(ghost shark)
Length = 85
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 8 tctagcagcacgtaaatattggcgtagtgaaa 39
||||||||||||||||||||||||| ||||||
Sbjct: 8 tctagcagcacgtaaatattggcgtggtgaaa 39
>RF00254;mir-16;AADN02005381.1/19775-19853 9031:Gallus gallus
(chicken)
Length = 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 actctagcagcacgtaaatattgg 29
||||||||||||||||||||||||
Sbjct: 6 actctagcagcacgtaaatattgg 29
>RF00254;mir-16;BAAF04019869.1/1288-1368 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tagcagcacgtaaatattggcgt 32
|||||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattggcgt 32
