miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;AAGU02300353.1/1892-1804 9785:Loxodonta africana
(African savanna elephant)
Length = 89
Score = 143 bits (72), Expect = 4e-34
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 1 gtgaggtagtaagttgtattgttgtggggtagggatattaggccccaattagaagataac 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 6 gtgaggtagtaagttgtattgttgtggggtagggattttaggccccaattagaagataac 65
Query: 61 tatacaacttactactttcc 80
|||||||| |||||||||||
Sbjct: 66 tatacaacctactactttcc 85
>RF00027;let-7;ABVD01531403.1/405-317 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 89
Score = 119 bits (60), Expect = 5e-27
Identities = 75/80 (93%)
Strand = Plus / Plus
Query: 1 gtgaggtagtaagttgtattgttgtggggtagggatattaggccccaattagaagataac 60
||||||||||||||||||||||| |||| ||||||| ||||||||||||| |||||||||
Sbjct: 6 gtgaggtagtaagttgtattgttatgggatagggattttaggccccaattggaagataac 65
Query: 61 tatacaacttactactttcc 80
|||||||||||||||||||
Sbjct: 66 catacaacttactactttcc 85
>RF00027;let-7;ABRQ01114151.1/10843-10755 9813:Procavia capensis
(cape rock hyrax)
Length = 89
Score = 119 bits (60), Expect = 5e-27
Identities = 75/80 (93%)
Strand = Plus / Plus
Query: 1 gtgaggtagtaagttgtattgttgtggggtagggatattaggccccaattagaagataac 60
|||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||
Sbjct: 6 gtgaggtagtaagttgtattgttgctgggtagagattttaggccccaattagaagataac 65
Query: 61 tatacaacttactactttcc 80
|||||||| |||||||||||
Sbjct: 66 tatacaacctactactttcc 85
>RF00027;let-7;AAPE01289140.1/8994-8905 59463:Myotis lucifugus
(little brown bat)
Length = 90
Score = 109 bits (55), Expect = 5e-24
Identities = 77/82 (93%), Gaps = 3/82 (3%)
Strand = Plus / Plus
Query: 1 gtgaggtagtaagttgtattgttgtg--gggtagggatattaggccccaattagaagata 58
|||||||||||||||||||||||||| |||||||||| | |||||||||| ||||||||
Sbjct: 6 gtgaggtagtaagttgtattgttgtgtggggtagggatttaaggccccaat-agaagata 64
Query: 59 actatacaacttactactttcc 80
||||||||||||||||||||||
Sbjct: 65 actatacaacttactactttcc 86
>RF00027;let-7;AAWZ01028874.1/2915-3002 28377:Anolis carolinensis
(green anole)
Length = 88
Score = 95.6 bits (48), Expect = 8e-20
Identities = 73/80 (91%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 1 gtgaggtagtaagttgtattgttgtggggtagggatattaggccccaattagaagataac 60
|||||||||||||||||||||||||||||||||||| || ||||||| | |||||||
Sbjct: 6 gtgaggtagtaagttgtattgttgtggggtagggat-ttgtgccccaaatcagagataac 64
Query: 61 tatacaacttactactttcc 80
||||||||||||||||||||
Sbjct: 65 tatacaacttactactttcc 84
>RF00027;let-7;AAPN01318002.1/36628-36717 9258:Ornithorhynchus
anatinus (platypus)
Length = 90
Score = 83.8 bits (42), Expect = 3e-16
Identities = 73/81 (90%), Gaps = 3/81 (3%)
Strand = Plus / Plus
Query: 2 tgaggtagtaagttgtattgttgtggggtagggatat--taggccccaattagaagataa 59
||||||||||||||||||||||||||||||||||| | | ||||||||||| |||||
Sbjct: 7 tgaggtagtaagttgtattgttgtggggtagggatttcttttgccccaattagc-gataa 65
Query: 60 ctatacaacttactactttcc 80
|||||||| ||||||||||||
Sbjct: 66 ctatacaatttactactttcc 86
>RF00027;let-7;CAAB01003893.1/10262-10170 31033:Takifugu rubripes
Length = 93
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 gtgaggtagtaagttgtattgttgtgggg 29
||||||||||||||||| |||||||||||
Sbjct: 6 gtgaggtagtaagttgtgttgttgtgggg 34
>RF00027;let-7;AANH01002616.1/64077-64170 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 94
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 gtgaggtagtaagttgtattgttgtggggt 30
||||||||||| ||||| ||||||||||||
Sbjct: 6 gtgaggtagtatgttgtgttgttgtggggt 35
