miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00253;mir-101;AADN02066347.1/1501-1427 9031:Gallus gallus
(chicken)
Length = 75
Score = 121 bits (61), Expect = 1e-27
Identities = 70/73 (95%)
Strand = Plus / Plus
Query: 5 tcctttttcggttatcatggtaccgatgctgtatatctgaaaggtacagtactgtgataa 64
||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 3 tcctttttcggttatcatggtaccggtgctgtatacgtgaaaggtacagtactgtgataa 62
Query: 65 ctgaagaatggtg 77
|||||||||||||
Sbjct: 63 ctgaagaatggtg 75
>RF00253;mir-101;AC120147.8/122464-122390 10090:Mus musculus
(house mouse)
Length = 75
Score = 115 bits (58), Expect = 8e-26
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 6 cctttttcggttatcatggtaccgatgctgtatatctgaaaggtacagtactgtgataac 65
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 4 cctttttcggttatcatggtaccgatgctgtagctctgaaaggtacagtactgtgatagc 63
Query: 66 tgaagaatgg 75
||||||||||
Sbjct: 64 tgaagaatgg 73
>RF00253;mir-101;AADN02012457.1/2688-2762 9031:Gallus gallus
(chicken)
Length = 75
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 44 aaaggtacagtactgtgataactgaagaatgg 75
||||||||||||||||||||||||||| ||||
Sbjct: 42 aaaggtacagtactgtgataactgaaggatgg 73
>RF00253;mir-101;BAAF04077052.1/5406-5332 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 45 aaggtacagtactgtgataactgaagaatgg 75
|||||||||||||||||||||||||| ||||
Sbjct: 43 aaggtacagtactgtgataactgaaggatgg 73
>RF00253;mir-101;BAAF04023117.1/37025-37099 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 50.1 bits (25), Expect = 4e-06
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 3 tgtcctttttcggttatcatggtaccgatgctgtatatctgaaaggtacagtactgtgat 62
||||| ||||| ||||||||||||||| |||||| | || | |||||||||| ||||
Sbjct: 1 tgtccattttcagttatcatggtaccggtgctgtgtgcctatcaagtacagtactatgat 60
Query: 63 aactgaaga 71
|||||||||
Sbjct: 61 aactgaaga 69
>RF00253;mir-101;AAVX01090491.1/533-606 7868:Callorhinchus milii
(ghost shark)
Length = 74
Score = 50.1 bits (25), Expect = 4e-06
Identities = 59/69 (85%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 3 tgtcctttttcggttatcatggtaccgatgctgtatatctgaaaggtacagtactgtgat 62
||||||||||| ||||||| |||||| |||||| | || | |||||||||||||||||
Sbjct: 1 tgtcctttttcagttatcacagtaccggtgctgtttttca-agaggtacagtactgtgat 59
Query: 63 aactgaaga 71
| |||||||
Sbjct: 60 agctgaaga 68
